Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01672 ATGGGTGCCATGGCCATCAACCGCAAGCGCCCCCAAGACTGCATGAACGTAAGCCGCGTCATTTCCGATTCCCCCGCTAAGCGCTCCAAATTCTCGACCCGACCCGTTCCCTTCTTCGCCGCCGCCGCCAGACTCTCCCGGTACCCGGAGGCGAAGACGCCGCTGGCGAGGGAGGTTCACGCGCCGTGCAGGTCCCGAAGATTGGAGCTTGCGAGGTCCTTCGCTAAGGTTAGTGTTAACGACGGCATGGGGAACGTTCTGGCGGCGAAGTACGAGAAGGCGAAACGTTCGGCATTGTCGAAATGCAGGTTCGTGGTGGAGAAGGAGAATGAGAAGGAGAAGGGGGTGATCGACGTGGATGCGACGGAGAGTGGAGAGCCTCGGTTAAGGAGTCGCGAGGATTGGAGTGTGGAAGAGGCGCGTGGTGATGGTGACGGCAAGGTTGGGGTTCGGGAACAGTCGACGGCGTCGTTTGACTCGGAGTTGACGAATGAGGAGGTGAAGGTGGTGAGTGGAGGGAAGGTGTGGGGTTCCGAGACGCATGATCTTTCGAGTGTTCATGTGTATAGGAAGTTGCTTGAGAGTGTTGGGAGGAGAAGTGATACTATTAACAGGTTGGATTTTGAGATTGAGCTGAATGAGAAGCGCGGGGAGACTCTTAATTTGTTGCGGCAGAAGAAGGAATTCGTTGAGGAACAGGAAGTGCCGCTAGAGCCTTTTGTCCCTCTTACAAGGGAGGAGGAAGATGAGGTTGAGCGTGCCTTTTCTGCCAACCGGTGGACGATCTTGGTTAGCCATGAGAATTCTAACATTGAGATCACGGGAGAGAAGTTTCAGTGCCTTAGGCCGACTGGATGGTTAAACGATGACGTGGTAAATTTGTACATGGCATTGCTGAAAGAGAGGGAGCAAAGAGAACCACAGAAATTTCTGAAATGTCATTTTTTCAATACCTTTTTCTACAAAAAGTTAATAAGTGGTATAGAGGGTTATGATTACAAATCTGTAAGAAGATGGACAAGCCAACGGAAATTGGGATACAGTCTACTTGAATGTGATAAAATATTTGTACCTATTCATCAAAACATACATTGGTGCTTGGCAGTTATCAATAAGAGAGATAAGACATTCCAGTATCTTGACTCAATGAAAGGAGAGGATATATCTGTGCTAGATAAGCTGGCTCAATATTTTGTGGATGAAGTAAATGACAAGACTGGAAAAGATATTGATGTAACTACCTGGGAAAAAGAATGTGTGAAAGACCTTCCTATGCAAAAAAATGGttatgattgtgggatgtttatgatcaaatatgctgaCTTTTACAGCAGGGGCCTGGAGCTATGTTTTAGCCAGGAAAATATGTCTTACTTCCGGGTTAGGACAGCTAAGGAGATCTTGAGATTGAAAGCTGAATGA 1422 0.4705 MGAMAINRKRPQDCMNVSRVISDSPAKRSKFSTRPVPFFAAAARLSRYPEAKTPLAREVHAPCRSRRLELARSFAKVSVNDGMGNVLAAKYEKAKRSALSKCRFVVEKENEKEKGVIDVDATESGEPRLRSREDWSVEEARGDGDGKVGVREQSTASFDSELTNEEVKVVSGGKVWGSETHDLSSVHVYRKLLESVGRRSDTINRLDFEIELNEKRGETLNLLRQKKEFVEEQEVPLEPFVPLTREEEDEVERAFSANRWTILVSHENSNIEITGEKFQCLRPTGWLNDDVVNLYMALLKEREQREPQKFLKCHFFNTFFYKKLISGIEGYDYKSVRRWTSQRKLGYSLLECDKIFVPIHQNIHWCLAVINKRDKTFQYLDSMKGEDISVLDKLAQYFVDEVNDKTGKDIDVTTWEKECVKDLPMQKNGYDCGMFMIKYADFYSRGLELCFSQENMSYFRVRTAKEILRLKAE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01672 473 MobiDBLite consensus disorder prediction 122 150 - -
Cca08g01672 473 MobiDBLite consensus disorder prediction 122 148 - -
Cca08g01672 473 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 169 - -
Cca08g01672 473 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 182 472 - -
Cca08g01672 473 SUPERFAMILY Cysteine proteinases 239 471 IPR038765 -
Cca08g01672 473 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 182 472 - -
Cca08g01672 473 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 169 - -
Cca08g01672 473 Pfam Ulp1 protease family, C-terminal catalytic domain 286 467 IPR003653 GO:0006508|GO:0008234
Cca08g01672 473 ProSiteProfiles Ubiquitin-like protease family profile. 271 443 IPR003653 GO:0006508|GO:0008234
Cca08g01672 473 Gene3D Adenoviral Proteinase; Chain A 230 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01672 Cca-Chr8 48438764 48444853 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01672 K08592 - gmx:100780703 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02769 11 55048306 55056972 Cca08g01672 08 48438764 48444853 PCT