Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02757 ATGCTTGCAGATCAGAAATCCCAAAAGACATACCCGACAGTGACCGAGGTATTGGACGAAGTAAAGAGAATGACAGACATAGGGTTCCCAATAGCAGCCATGAGCCTTGTGGGGTACCTCAAAAACCTGACTTTAGTCGTGTGCATGGGAAGGTTAGGAAGCCTCGAGTTAGCAGGAGGTTCTCTGGCCATAGGCTTCACCAACATAACCGGTTACTCTGTCCTCTCAGGTCTAGCAATGGGCATGGAACCCCTCTGCACCCAAGCCTTCGGTTCTCGAAACTTCTCCTTACTCTCTCTCACTCTGCACAGAACAATCCTCATGTTACTCCTATTCTCTATCCCCATTTCTCTTCTCTGGTTCAACCTCCAAACTCTCATGCTTCTCCTTCGTCAGAATCCAGACATAACCCGAGTTGCAACCCTCTATTGCCGCTTCGCCATCCCAGACCTCATCGCCAACAGCTTCCTCCACCCTCTTCGCATTTACCTGCGCAGTAGAGGAACAACTTGGCCACTGTTCTGGTGCACTTTACTCTCCATTCTTCTACACCTTCCCATCATAACTTTCTTAACCTTCAAACTCCACCTTGGCGTACGGGGAATCGCCATTTCATCCTGCGTTGCCAACTTTAACAACCTTTTCTTCCTTCTTTTATGCATGTTCTACACACGTGCCCCTAAGGAGTACTCCTTACACTTGCCATTATTAACGACAGAGCCAGAttggatacaagataaaaatacttttgagaacttttcaactgaaaataaacaactttttttgattgagaaactctcaaaaacgtttttaagtttgtatccaaacagactGATTGTATCATGTAGCAGTAGTAGCACTAGGGAGTGGTGTGTGCTAATTAAATTTTCGGTACAAAGTTGTCTAGCTGTTTGCTTGGAATGGTGGTGGTACGAGTTGATGACAATTTCAGCAGGTTACCTTGATAACCCTCGTGTTGCTCTAGCCACGGCTGGGATAGTGATACAAACCACGTCTCTTATGTACACTTTGCCAACAGCACTAAGTGCATCGGTGTCAACGAGAGTAGGAAATGAACTTGGGGCGGGGCAAGGTGAAAGGGCAAGTTTGTCAACTGTAGTGGCCATAGGATTAGCACTTGCAAGCTCAATTTTCGGTTTGTTGTGGACCACAGTGGGGAGAGAAAAGTGGGGGAGAGTGTTCACTAGTGATAGTGAGGTGCTACAATTGAGCATGGTGGTGTTACCTATAATTGGAGTGTGTGAGTTAGCGAATTGTCCTCAAACCACAAGCTGTGGAATCCTTAGAGGGAGTGCTAGGCCTGGTGTTGGGGCTGTTATAAACTTTTGCTCGTTTTATTTGGTGGGAGCACCAGTGGCAATTGTTTTGGCATTCGTTTGGAAACTAGGGATGGTGGGCCTGTGTTACGGCCTACTTGCAGCACAGATCGCATGTGTTGTCTCAATTTTTGTTGTGGTGTTCAAGACAGATTGGGAAAGGGAGTCGTTGAAAGCCAGAAGCATGGTCGGAAAGAGTTCATGTGCCACATTTGCATTTGAGGACCAAACAGTCAAATGTGAAGAAGGTGTTGTGTTTCTCAAAGAGAACGGCATACACTAG 1620 0.4407 MLADQKSQKTYPTVTEVLDEVKRMTDIGFPIAAMSLVGYLKNLTLVVCMGRLGSLELAGGSLAIGFTNITGYSVLSGLAMGMEPLCTQAFGSRNFSLLSLTLHRTILMLLLFSIPISLLWFNLQTLMLLLRQNPDITRVATLYCRFAIPDLIANSFLHPLRIYLRSRGTTWPLFWCTLLSILLHLPIITFLTFKLHLGVRGIAISSCVANFNNLFFLLLCMFYTRAPKEYSLHLPLLTTEPDWIQDKNTFENFSTENKQLFLIEKLSKTFLSLYPNRLIVSCSSSSTREWCVLIKFSVQSCLAVCLEWWWYELMTISAGYLDNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQGERASLSTVVAIGLALASSIFGLLWTTVGREKWGRVFTSDSEVLQLSMVVLPIIGVCELANCPQTTSCGILRGSARPGVGAVINFCSFYLVGAPVAIVLAFVWKLGMVGLCYGLLAAQIACVVSIFVVVFKTDWERESLKARSMVGKSSCATFAFEDQTVKCEEGVVFLKENGIH 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02757 539 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 514 - -
Cca11g02757 539 CDD MATE_eukaryotic 20 504 IPR045069 GO:0042910|GO:1990961
Cca11g02757 539 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca11g02757 539 Pfam MatE 300 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca11g02757 539 PANTHER PROTEIN DETOXIFICATION 55 12 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02757 Cca-Chr11 54931466 54934116 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02757 K03327 - gmx:100798616 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02757 11 54931466 54934116 Cca11g02757 11 54931466 54934116 ECH
Cca11g02757 11 54931466 54934116 Cca08g01691 08 48645549 48647594 PCT