Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01691 ATGGTTGCGGAGGAGAAATCCCAAAAGACATACCCGACAACTGCCGAGGTAGTGGAGGAGCTAAAGAGAATGGGGGACATAGGAGTCCCAATAGCAGCCATGAGCCTCGTGGGGTACCTCAAAAACATGATCTTAGTTGTGTGCATGGGAAGGTTGGGAAGCCTTGAGTTAGCTGGTGGTGCTTTGGCCATAGGCTTCACCAACATAACCGGTTTCTCAGTCCTCTCAGGTTTAGCCATGGGAATGGAACCTCTTTGCACACAAGCCTTTGGTTCAAGAAACTTGTCTCTAGTCTCTCTCACTCTGCAAAGGACGATTTTTATGTTACTGGTGGCTTCAGTACCCATTTCTCTCTTGTGGCTCAAGCTTGAACCTCTCATGCTATGGCTTCACCAGGACCCTGACATAACCAAGGTGGCAAGCATGTATTGCTTCTTCTCCATCCCTGACCTAATTTCCAACAGCTTCCTCCACCCAATCCGCATCTATTTACGTAGCAAAGGCACAACTTGGCCTCTATTGTGGTGCACTTTACTTTCCGTTCTCATACACATCCCTATCGTGGCTTTTTTGACCTTCAAACTCCACCTTGGTGTACCCGGGATAGCTATGTCAGCTTTTGTTGCCAACTTCAACACCCTTTTCTTCCTCCTATCATACATGCTCTACATGCGCGTCTCAAAGGGGTCACTTTCCATGCCTTTATTAATATCTCGCCCCTTGTCATCACGACAACAAGACCAAACTTTAGCCACAATAACAAGAACAAGTTCACTAGGCAAAGAGTGGGGCATGCTGATAAGGTTCTCCATTCAGAGTTGCTTAGGAGTGTGCTTGGAGTGGTGGTGGTACGAGTTCATGACGATTCTAGCGGGTTACCTTTACAACCCGCGTGTTGCTTTGGCCACTGCTGGCATAGTGATACAAACCACGTCTCTCATGTACACTTTACCAACGGCACTGAGTGCTTCGGTTTCAACAAGAGTGGGGAATGAACTCGGGGCTGGTCAACCCCAAAGGGCAAGGTTGTCAACTGTGGTGGCAATAGGAATGGCACTTGCAAGTTCAACATTGGGGTTGGTTTGGACCACATTGGGGAGAGAGAGATGGGGGAGGGTGTTCACAAGTGATAGTGAGGTCTTGGAACTCACCATGAGTGTGTTACCCATAATTGGAGTTTGTGAGTTAGCAAATTGTCCTCAAACCACAAGCTGTGGAATCCTTAGGGGAAGTGCTAGGCCTGGTGTTGGGGCTGGCATAAATTTTTACTCCTTTTACTTGGTGGGGGCTCCAGTGGCCATAGTCATGGCTTTCTTTTGGAGACTAGGGTTGGTGGGTCTTTGCTATGGCCTGTTGGCAGCACAGATAGCATGTGTGGTCTCAATTCTAGTTGTGGTATACAACACTGATTGGGAAAGGGAGTCTTTGAAGGCTAAAACCTTGGTAGGAAAGACTTCATCATGTGACACTAACACAATGGAACAACATGGAGACCATGAAGCAGTCAAATGTGAAGAAGCTACTGTCTTTCTCAATCACAACAATACCTCCCAAAAGTTACCCAAAATCCTCGCGTTAGTGGAAGAAACACAAGCTAAGGATATATCATCATGA 1614 0.4709 MVAEEKSQKTYPTTAEVVEELKRMGDIGVPIAAMSLVGYLKNMILVVCMGRLGSLELAGGALAIGFTNITGFSVLSGLAMGMEPLCTQAFGSRNLSLVSLTLQRTIFMLLVASVPISLLWLKLEPLMLWLHQDPDITKVASMYCFFSIPDLISNSFLHPIRIYLRSKGTTWPLLWCTLLSVLIHIPIVAFLTFKLHLGVPGIAMSAFVANFNTLFFLLSYMLYMRVSKGSLSMPLLISRPLSSRQQDQTLATITRTSSLGKEWGMLIRFSIQSCLGVCLEWWWYEFMTILAGYLYNPRVALATAGIVIQTTSLMYTLPTALSASVSTRVGNELGAGQPQRARLSTVVAIGMALASSTLGLVWTTLGRERWGRVFTSDSEVLELTMSVLPIIGVCELANCPQTTSCGILRGSARPGVGAGINFYSFYLVGAPVAIVMAFFWRLGLVGLCYGLLAAQIACVVSILVVVYNTDWERESLKAKTLVGKTSSCDTNTMEQHGDHEAVKCEEATVFLNHNNTSQKLPKILALVEETQAKDISS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01691 537 PANTHER MULTIDRUG RESISTANCE PROTEIN 12 487 - -
Cca08g01691 537 TIGRFAM matE: MATE efflux family protein 30 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g01691 537 CDD MATE_eukaryotic 20 477 IPR045069 GO:0042910|GO:1990961
Cca08g01691 537 Pfam MatE 30 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g01691 537 Pfam MatE 274 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g01691 537 PANTHER PROTEIN DETOXIFICATION 55 12 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01691 Cca-Chr8 48645549 48647594 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01691 K03327 - gmx:100785533 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01691 08 48645549 48647594 Cca08g01691 08 48645549 48647594 ECH
Cca11g02757 11 54931466 54934116 Cca08g01691 08 48645549 48647594 PCT