Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02750 ATGGCCTTTGCAAAGACTGTTTCCATTCTTATTTTGTTCTTTGCATTGGCCTGTAATGCGGATAAGTCTCTAAAACCTGAACCAGTTGCTGGTCCTGATATGTTCAAGAATAAAAATGTGGCTAAGGACGTCCTCCTTCCTGGGGAAAAAGTATTTAACGTCCAGGATTTTGGAGCCAAAGGTGATGGCAAGTTTGACTGCACCCAGGCTTTCATGGATGGATGGAGAAAGGTGTGCCATGAAACCACAGGGCCAGCGAGGCTTTTGGTTCCTCCTGGCAGATTCTTGGTTTCATCAATGTTTTTCAGCGGGCCATGCACTGCTGCAAGCCCAGTAACAATTCAAGTACAAGGGACTGTTCTGGCTACCGTTGATCTTTCGGAGTACGAAAACGGCGATTGGCTCATTTTCCAGAAGCTCGATGGCTTGAAAATTATTGGTGGGGGCATTTTCGATGGCCAGGGTAAATCCTCGTGGGAATACTCCGAGAATTGCGAATCAAGCGCTGATAGTACGTGCGCCAGAAATCCAAGCAGCCTTTTTTTCAGCGATAGCAGCAACGTGGTTATACAGGGTATCAGATCAGTGAACCCCAAAGGCTTTCACATATTCGTTACTAAATGCACAAACGTGAGATTGAGAAAACTTAAGCTGCTTGCACCCGCAACAAGCCCCAACACTGATGGCATTCATGTCAGCCACTCTGATACAGTGATAATATCCAGAAATACCATTGCAACCGGGGATGATTGCATCTCTATGATCCAAGGAGTTAAAAATATTTTCATCAACAGACTCAGATGTGGCCCTGGACACGGTATTAGTATCGGAAGCCTTGGGAAGTATCCGAATGAGGTAGAGGTGAAAGGCGTTCGCATCCAGAACTGTTCATTGACCGACACGACCAATGGCCTTAGAATCAAATCATGGCCAGATAAATATCCTGGTGCAGCGTCTGATATAAGCTTCAGCAACATTATCATGCAAAATGTGAAAAACCCTATCATCATTGATCAAGAGTATGAATGTTATCCAGACTGCAAGAAGAAGCCTTCACTTGTAAAGCTCCAGAATATTCATTTTCAAAATGTAAAGGGAACTACAACCACACCACTTGCAGTGGATTTAAGGTGCAGCAAGCTTTACCCGTGCCAAGGTATAACAGTTCGAGACATTGACCTGAAAGTTGGACTCGCCCCAACCATCTCACGCTGTGTCAATACAAAACCTCTCTTTGGAGGCTTGCTAATGCCCCCAGCATGCATATAG 1269 0.45 MAFAKTVSILILFFALACNADKSLKPEPVAGPDMFKNKNVAKDVLLPGEKVFNVQDFGAKGDGKFDCTQAFMDGWRKVCHETTGPARLLVPPGRFLVSSMFFSGPCTAASPVTIQVQGTVLATVDLSEYENGDWLIFQKLDGLKIIGGGIFDGQGKSSWEYSENCESSADSTCARNPSSLFFSDSSNVVIQGIRSVNPKGFHIFVTKCTNVRLRKLKLLAPATSPNTDGIHVSHSDTVIISRNTIATGDDCISMIQGVKNIFINRLRCGPGHGISIGSLGKYPNEVEVKGVRIQNCSLTDTTNGLRIKSWPDKYPGAASDISFSNIIMQNVKNPIIIDQEYECYPDCKKKPSLVKLQNIHFQNVKGTTTTPLAVDLRCSKLYPCQGITVRDIDLKVGLAPTISRCVNTKPLFGGLLMPPACI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02750 422 Pfam Glycosyl hydrolases family 28 83 409 IPR000743 GO:0004650|GO:0005975
Cca11g02750 422 PANTHER - 2 421 - -
Cca11g02750 422 ProSitePatterns Polygalacturonase active site. 265 278 IPR000743 GO:0004650|GO:0005975
Cca11g02750 422 SUPERFAMILY Pectin lyase-like 47 422 IPR011050 -
Cca11g02750 422 PANTHER POLYGALACTURONASE 2 421 - -
Cca11g02750 422 SMART pbh1 235 256 IPR006626 -
Cca11g02750 422 SMART pbh1 185 205 IPR006626 -
Cca11g02750 422 SMART pbh1 288 309 IPR006626 -
Cca11g02750 422 SMART pbh1 318 339 IPR006626 -
Cca11g02750 422 SMART pbh1 208 234 IPR006626 -
Cca11g02750 422 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Cca11g02750 422 Gene3D - 46 411 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02750 Cca-Chr11 54865131 54867255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02750 51 421 Glycoside Hydrolase AT1G02790 45.288 2.52e-107 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02750 K01213 - gmx:100800324 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02750 11 54865131 54867255 Cca11g02750 11 54865131 54867255 ECH
Cca11g02750 11 54865131 54867255 Cca08g01711 08 48980912 48986480 PCT