Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01711 ATGGCCATTACGAAGAGAGTTGGTGTTATAATTTTGTGGTTTGCACTGGCTTATTATGTGGATTCCATAAAAGGAGTAATTCCTGTTGCTGGTCCTTTGATCAACAAAGGCGCAAATGTAGTTACGGATGCCCTTTCTCCTGGCGAGAAGGTAAACAATGTCATGAGCTTTGGAGCCAAACCTGATGGAAAATTTGACTGCACTCAGGCTTTCATGGACGCATGGAGAGCAACTTGCAAGTCCAACGTGCAAGCGAGGCTTCTGGTTCCTCAGGGAAGATTCGTGGTTTCTACCATGTTTTTCGCAGGGCCATGTTCGACTCCAAATCCCGTAACAATCCAAGTTGTTGGCACTGTTGTGGCCACAACAGATATCAGTGAATATGAGAATGGTGAATGGCTCATGTTTGAAGAACTAAATGGTTTAAAACTTATTGGTGGTGGTACTTTTGATGGCGCGGGTAAGTCTTCATGGGCACATACTGAGAACTGTAAAACAGACCCCAGCGACACTTGTGTCAGAAATCCTAGTAGTCTTTATTTCAACAAAGTTAGCAATGGAATTCTACATAACATAAAATCCGTGGATCCCAAAGGCTTTCACATATTTATCACCAACAGTGATAACATCAGAGCTGAATCACTTAGGCTCACTGCACCAGCTACCAGTCCCAACACCGATGGAATTCATATTAGCAGCTCTTTCAATGTAAAATTATCCGAAAATAACATTGAAACTGGAGATGATTGTGTTTCCATGATAAAAGGAGTCAAGAATGTTACCGTCCACAAATTGCATTGCGGTCCTGGACACGGTATTAGTGTTGGAAGTCTTGGAAAGTATGCAGATGAACCAGAAGTGAACCAGATTCGTGTCGAGAACTGCACGTTGGTTGGCACAGACAATGGCATTAGAATCAAGACATGGCCAGATAAGTTTCCAGGTTCAGCATCAGATATAGGCTACAGTGACATTATCATGGAAAATGTTAAAAATCCTATCATCATCGACCAAGAGTATCAATGCTTTCCAAACTGCAAAAAGAAGCCTTCACTTGTAAAGATAAGTGATGTTCATTTTTCAAATATAAAGGGAAGCACAACTTCACCAATTGCAGTGGATTTAAGGTGTAGCCAGCAGTTTCCATGCAATAATGTTAAACTCACCAACATAGACCTGAATCTTGGACCCAGGCCTTCAGGCTCTAGATGTGCCAACATTAAACCAATCTATGTTGGCATACAAAAACCACCAGCTTGCCTGTAA 1266 0.4179 MAITKRVGVIILWFALAYYVDSIKGVIPVAGPLINKGANVVTDALSPGEKVNNVMSFGAKPDGKFDCTQAFMDAWRATCKSNVQARLLVPQGRFVVSTMFFAGPCSTPNPVTIQVVGTVVATTDISEYENGEWLMFEELNGLKLIGGGTFDGAGKSSWAHTENCKTDPSDTCVRNPSSLYFNKVSNGILHNIKSVDPKGFHIFITNSDNIRAESLRLTAPATSPNTDGIHISSSFNVKLSENNIETGDDCVSMIKGVKNVTVHKLHCGPGHGISVGSLGKYADEPEVNQIRVENCTLVGTDNGIRIKTWPDKFPGSASDIGYSDIIMENVKNPIIIDQEYQCFPNCKKKPSLVKISDVHFSNIKGSTTSPIAVDLRCSQQFPCNNVKLTNIDLNLGPRPSGSRCANIKPIYVGIQKPPACL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01711 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Cca08g01711 421 PANTHER - 2 420 - -
Cca08g01711 421 Gene3D - 36 418 IPR012334 -
Cca08g01711 421 PANTHER POLYGALACTURONASE 2 420 - -
Cca08g01711 421 SMART pbh1 207 233 IPR006626 -
Cca08g01711 421 SMART pbh1 234 255 IPR006626 -
Cca08g01711 421 SMART pbh1 257 277 IPR006626 -
Cca08g01711 421 SMART pbh1 287 308 IPR006626 -
Cca08g01711 421 SUPERFAMILY Pectin lyase-like 48 421 IPR011050 -
Cca08g01711 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01711 Cca-Chr8 48980912 48986480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01711 45 420 Glycoside Hydrolase AT4G18180 42.574 2.30e-104 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01711 K01213 - gmx:106796220 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01711 08 48980912 48986480 Cca08g01711 08 48980912 48986480 ECH
Cca11g02750 11 54865131 54867255 Cca08g01711 08 48980912 48986480 PCT