Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02739 ATGCTAGTGGCATTGCTATTGCTGCTGGCATTGAGCAATGATGTCAGAGTTAATGGTGATGGTGGACAATGTGAGCATAATCTGGCACTAAAACCAAGACCACACACTGTGTCAATCTTGGAGTTCGGCGCGGTTGGGGATGGTAAAACGTTGAACACTATTGCATTCCAGAATGCCATATTCTATCTCAAGTCATTTGCCGACAAAGGTGGTGCTCAGTTATATGTGCCACCCGGAACATGGCTCACTCAAAGTTTCAATCTTACTAGTCATCTTACACTCTTCTTGGAAAAAGGTGCTAACATTCTTGGATCTCAGGATCCATTTCACTGGGAAGTTGTTGATCCCTTACCTTCTTATGGCCGAGGAGTTGAAGTTCCTGGGGGAAGATATCAGAGCTTAATAAATGGGTATATGTTACATGATGTGGTCATAACAGGCAATAGTGGAACAATTGATGGCATGGGATTGGCTTGGTGGGAATTGTTTAGCTCTCATTCCCTTAACTACAGTCGTCCTCATCTGATTGAACTAGTGGCATCTCATCATGTGGTTGTTTCAAATCTTATATTCTTGAATGCTCCTGCATATAGCATCCACCCAGTTTATTGCAGCAATGTACATATTCACAATATTTCAATTTCTGCTCCTCCAGAATCCCCTTATACTGTTGGCATAGTACCAGATTCTTCTGATCATGTTTGCATAGAGGATTGTCTCATTGCAACTGGCTATGATGCAATTTCCCTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTGCATCTGCAGGCCTATTCTGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTCGTGGAGAATGTTCATCTTTACAACTCAAATAGTGGCATTGAGTTCAGAACCATGAGGGGAAGAGGTGGTTACATGAAGGAAATCATTGTAACAGACATAGAAATGGAGAATATATACACAGCAATAGCTGCCACAGGTAATTGTGGATCTCATCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGACCACATTATTTTGCAAGATATGACAGGCACAAACATCACTATTGCTGGAAACTTTGCAGGACTACAAGAATCTCCCTTCACCAACATATGCCTTTCCAACATAACTTTGTCTCTAAATTCTCTTTCTTCCATCACTTGGAAATGCTCAAATGTCTACGGTTTTTCAGATTCTGTTCTTCCCAAACCCTGTCCTGATCTTGAGACCCTTTCGGATTGTCTCTCCCTTATGAGTATCAACGGAAAAACTGCAGTCATGTGA 1344 0.4204 MLVALLLLLALSNDVRVNGDGGQCEHNLALKPRPHTVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGANILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLHDVVITGNSGTIDGMGLAWWELFSSHSLNYSRPHLIELVASHHVVVSNLIFLNAPAYSIHPVYCSNVHIHNISISAPPESPYTVGIVPDSSDHVCIEDCLIATGYDAISLKSGWDEYGIAYGRPTENVHIRRVHLQAYSGSTIAFGSDMSGGISNILVENVHLYNSNSGIEFRTMRGRGGYMKEIIVTDIEMENIYTAIAATGNCGSHPDDKFDPNALPLLDHIILQDMTGTNITIAGNFAGLQESPFTNICLSNITLSLNSLSSITWKCSNVYGFSDSVLPKPCPDLETLSDCLSLMSINGKTAVM 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02739 447 Pfam Glycosyl hydrolases family 28 134 413 IPR000743 GO:0004650|GO:0005975
Cca11g02739 447 Gene3D - 24 418 IPR012334 -
Cca11g02739 447 PANTHER PECTIN LYASE-RELATED 2 436 - -
Cca11g02739 447 Pfam Pectate lyase superfamily protein 37 94 IPR024535 -
Cca11g02739 447 SUPERFAMILY Pectin lyase-like 29 427 IPR011050 -
Cca11g02739 447 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 2 436 - -
Cca11g02739 447 SMART pbh1 265 287 IPR006626 -
Cca11g02739 447 SMART pbh1 231 252 IPR006626 -
Cca11g02739 447 SMART pbh1 293 314 IPR006626 -
Cca11g02739 447 SMART pbh1 204 230 IPR006626 -
Cca11g02739 447 SMART pbh1 181 203 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02739 Cca-Chr11 54773403 54776385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02739 3 440 Glycoside Hydrolase AT3G06770 62.838 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02739 - - gmx:100802343 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02739 11 54773403 54776385 Cca11g02739 11 54773403 54776385 ECH
Cca11g02739 11 54773403 54776385 Cca08g01719 08 49099352 49102824 PCT