Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01719 ATGTTACATGATGTGGTTATAACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCTCTCATTCCTTGAACCACAGTCGTCCTCATCTGGTTGAAATTGTTGCATCTGATTATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCAGCTTATAGCATACACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCCACTCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTATTGTTTCCATGGGATATGATGCAATTTCTCTCAAAAGTGGCTGGGATGAGTATGGCATTGCCTATGGCAGGCCTTCTGAGAATGTACACATCAGAAGGGTGCATCTTCATGCATTTTCTGGTTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATGTTCTAGTGGAGCATGCTCATCTTTTCAACTCAAATAGTGGCATTGAGTTCAGAACCACCAAAGGAAGAGGTGGTTATATGAAGGAAATTGTTATATCAGACATACAAATGGAGAGTGTTCATACAGCAATTGCTGCCACAGGTAATTGTGGATCTCATCCTGATGACAAGTTTGATCCAAATGCACTTCCACATTTGGATCACATTACCTTGAAGGATGTCACAGGTACAAATATTACCATTGCTGGAAACCTTGCTGGAATAGAGGAATCACCTTTCACAAATATATGCCTTTCCAACATAACCTTGTCTACAAATTCTGTTTCTCCTATTACATGGAATTGCTCAAATGTGTCCGGATTTTCAGATTCCGTGCTCCCAGAACCTTGTCCAGAACTTGGCAACCCCTCATATGATTCATTCTCATCGTGTTTCCACCTGCTGAGGATTATCAGTGGCAAAACTGCAGTGCAGTGA 948 0.4103 MLHDVVITGNNGTIDGMGMVWWEWYSSHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISTPPESPYTVGIVPDSSDNVCIEDCIVSMGYDAISLKSGWDEYGIAYGRPSENVHIRRVHLHAFSGSALAFGSDMSGGISNVLVEHAHLFNSNSGIEFRTTKGRGGYMKEIVISDIQMESVHTAIAATGNCGSHPDDKFDPNALPHLDHITLKDVTGTNITIAGNLAGIEESPFTNICLSNITLSTNSVSPITWNCSNVSGFSDSVLPEPCPELGNPSYDSFSSCFHLLRIISGKTAVQ 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01719 315 Pfam Glycosyl hydrolases family 28 6 276 IPR000743 GO:0004650|GO:0005975
Cca08g01719 315 SUPERFAMILY Pectin lyase-like 3 290 IPR011050 -
Cca08g01719 315 Gene3D - 1 281 IPR012334 -
Cca08g01719 315 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 1 307 - -
Cca08g01719 315 PANTHER PECTIN LYASE-RELATED 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01719 Cca-Chr8 49099352 49102824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01719 2 290 Glycoside Hydrolase AT3G06770 62.976 2.48e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01719 - - gmx:100777503 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01719 08 49099352 49102824 Cca08g01719 08 49099352 49102824 ECH
Cca11g02739 11 54773403 54776385 Cca08g01719 08 49099352 49102824 PCT