Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02736 ATGGGAGTCACAACCTTTACACAGGAGTACTCTTCCGCTGTTGCCCCATCACGCATGTTCAAGGCCCTGATCATAGACTCCAGAAATTTGCTTCCGAAGCTCTTGCCTCAGTTTGTAAAAGATGTGAATATCATCCAAGGAGATGGGGAAGCTGGAAGCATTGAACAAGTTAACTTCAATGAAGCGAGCCCCTTCAAATACCTGAAACACAGGATTGATGTGCTTGATAAGGACAACTTGGTTTGCAAATACACTATGATTGAAGGGGATCCATTAGGTGACAAGCTTGAGTCTATAGGTTATGAGGTGAAGTTTGAGGCCACTAGTGAGGGAGGTTGCCTCTGCAAAATGACAAGTAACTACAAGACCATTGGGGAGTTTGGTGTTAAAGAGGAAGAGGTGAAGGAAGGAAGGGAAAGCACTATCGCAATTTACAGAGTTGTGGAGTCATACCTGCTAGAGAACCCACAAGTATATGCAtaa 483 0.441 MGVTTFTQEYSSAVAPSRMFKALIIDSRNLLPKLLPQFVKDVNIIQGDGEAGSIEQVNFNEASPFKYLKHRIDVLDKDNLVCKYTMIEGDPLGDKLESIGYEVKFEATSEGGCLCKMTSNYKTIGEFGVKEEEVKEGRESTIAIYRVVESYLLENPQVYA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02736 160 CDD Bet_v1-like 5 152 - -
Cca11g02736 160 SUPERFAMILY Bet v1-like 2 159 - -
Cca11g02736 160 PANTHER - 1 160 - -
Cca11g02736 160 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Cca11g02736 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca11g02736 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca11g02736 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca11g02736 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca11g02736 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca11g02736 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca11g02736 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca11g02736 160 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 160 - -
Cca11g02736 160 Gene3D - 1 160 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02736 Cca-Chr11 54749402 54750458 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02736 - - gmx:100500506 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02736 11 54749402 54750458 Cca11g02736 11 54749402 54750458 ECH
Cca08g01726 08 49130710 49157218 Cca11g02736 11 54749402 54750458 PCT