Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01726 ATGGGTGTTTTTACTTTCCAGAATGAGAACACCTCTACCGTAGCTCCAGCTAGGCTTTACAAACCTCTGGTTAAGGATTCTGATGACCTCATCCCAAAGGCTGTCGAGGCCATCAAGAGTGTTGAAATCCTTGAAGGAAATGGTGGCCCCGGAACCATCAAGAAGTTCACTTTCGTTAAGGGAGGAAGTGTGAAGCACCAAGTGAATGTGATCGACGTGGATAACTACGTGTACCAGTACAGCATAATTGAAGGCGGTGTTCTGTCTGAGCAGTTGGAGTTGGAGAAGGTGAGTTATGAGTACAAATTGGTGCCAAAGCCTGATGGAGGAGGCATCATAAAGGCCACACGCAAATACTACACCAAAGGCGATGCTCAGCTCACACAAGACTTTCTCAAGGCTAACCAGGACATTTCTGCTGCCTTCGTCAAGGCTATTGAGGATTATCTTTTGGCTAATCCTCATTACAACTAA 474 0.4599 MGVFTFQNENTSTVAPARLYKPLVKDSDDLIPKAVEAIKSVEILEGNGGPGTIKKFTFVKGGSVKHQVNVIDVDNYVYQYSIIEGGVLSEQLELEKVSYEYKLVPKPDGGGIIKATRKYYTKGDAQLTQDFLKANQDISAAFVKAIEDYLLANPHYN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01726 157 PRINTS Major pollen allergen Bet V1 signature 142 152 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01726 157 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01726 157 PRINTS Major pollen allergen Bet V1 signature 108 124 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01726 157 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01726 157 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Cca08g01726 157 SUPERFAMILY Bet v1-like 2 157 - -
Cca08g01726 157 CDD Bet_v1-like 4 150 - -
Cca08g01726 157 Gene3D - 2 157 IPR023393 -
Cca08g01726 157 PANTHER NODULIN-13 1 157 - -
Cca08g01726 157 PANTHER - 1 157 - -
Cca08g01726 157 Pfam Pathogenesis-related protein Bet v 1 family 1 153 IPR000916 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01726 Cca-Chr8 49130710 49157218 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01726 - - ccaj:109817607 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01726 08 49130710 49157218 Cca08g01726 08 49130710 49157218 ECH
Cca08g01726 08 49130710 49157218 Cca11g02736 11 54749402 54750458 PCT