Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca11g02708 | ATGAGTACCATGAAATTTTGTCGCCGATGCAACAACGTTCTGTATCCTAAGGAGGACAAGGAGCAAAAGCTTCTTCTCTACGCTTGCCGCAACTGCAATCACGAGGAGATTGCAGATAATAACATTGTCTATAGAAATAAGATACATCATTCTGTTCAACGGCGCACTCGTGAGCTGGAAAATGTTGCTGCAGATCCAACACTTCCCCGCACCAAGTCTGTTCGCTGCTCTCAATGCAATCATGGAGAAGCTGTCTTTTTCCAGGCACCGGTCAAAGGGGAAGAAGGCATGGCCCTCATTTTTGTTTGCTGCAACCCCTCTTGTGGCAACCGTTGGAGAGACTAG | 345 | 0.4725 | MSTMKFCRRCNNVLYPKEDKEQKLLLYACRNCNHEEIADNNIVYRNKIHHSVQRRTRELENVAADPTLPRTKSVRCSQCNHGEAVFFQAPVKGEEGMALIFVCCNPSCGNRWRD | 114 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca11g02708 | 114 | CDD | Zn-ribbon_RPB9 | 64 | 113 | IPR034012 | GO:0006379 | |
| Cca11g02708 | 114 | Pfam | Transcription factor S-II (TFIIS) | 75 | 113 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Cca11g02708 | 114 | PANTHER | DNA-DIRECTED RNA POLYMERASE SUBUNIT | 1 | 114 | - | - | |
| Cca11g02708 | 114 | SUPERFAMILY | Zinc beta-ribbon | 55 | 114 | - | - | |
| Cca11g02708 | 114 | SMART | rpol9cneu | 5 | 58 | IPR001529 | GO:0006351 | |
| Cca11g02708 | 114 | ProSiteProfiles | Zinc finger TFIIS-type profile. | 72 | 113 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Cca11g02708 | 114 | SUPERFAMILY | Zinc beta-ribbon | 1 | 48 | - | - | |
| Cca11g02708 | 114 | PIRSF | RNApol_RpoM | 4 | 114 | IPR012164 | GO:0006351 | |
| Cca11g02708 | 114 | Gene3D | - | 47 | 114 | - | - | |
| Cca11g02708 | 114 | Pfam | RNA polymerases M/15 Kd subunit | 4 | 36 | IPR001529 | GO:0006351 | |
| Cca11g02708 | 114 | Gene3D | - | 1 | 46 | - | - | |
| Cca11g02708 | 114 | SMART | Cys4_2 | 74 | 114 | IPR001222 | GO:0003676|GO:0006351|GO:0008270 | |
| Cca11g02708 | 114 | PANTHER | DNA-DIRECTED RNA POLYMERASE | 1 | 114 | IPR012164 | GO:0006351 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca11g02708 | Cca-Chr11 | 54458331 | 54462846 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca11g02708 | K03017 | - | gmx:100806190 | 234.958 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca11g02708 | 11 | 54458331 | 54462846 | Cca11g02708 | 11 | 54458331 | 54462846 | ECH | |
| Cca11g02708 | 11 | 54458331 | 54462846 | Cca08g01751 | 08 | 49474646 | 49477783 | PCT |