Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01751 ATGAGTACCATGAAATTTTGCCGCGAATGCAACAACATTCTGTACCCTAAGGAAGACAGAGATCAGAAGATTCTTCTCTACGCATGCCGCAACTGCGACCATCAGGAGGTTGCTGATAACTTCTGTGTGTATAGGAACGAGATACATCACTCTGTAGGAGAGCGCACTCAAGTGTTGCAGGATGTGGCTGCAGATCCAACGCTTCCTCGAACTAAGGCCGTTCGCTGCACTCAATGTAATCATGGTGAAGCTGTCTTTTTCCAGGCAACGGCCAGAGGGGAAGAAGGAATGACACTTTTTTTTATCAAGGTGTGGTGCAATGTTGTTGTGCATGAAGACAAGCGAGTGGATGTGGAAGTGTGTTCATGGACTATTGGAGCCTGA 384 0.4714 MSTMKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPRTKAVRCTQCNHGEAVFFQATARGEEGMTLFFIKVWCNVVVHEDKRVDVEVCSWTIGA 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01751 127 Gene3D - 1 46 - -
Cca08g01751 127 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Cca08g01751 127 PANTHER DNA-DIRECTED RNA POLYMERASE 1 108 IPR012164 GO:0006351
Cca08g01751 127 PIRSF RNApol_RpoM 4 114 IPR012164 GO:0006351
Cca08g01751 127 CDD Zn-ribbon_RPB9 64 107 IPR034012 GO:0006379
Cca08g01751 127 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Cca08g01751 127 Gene3D - 47 119 - -
Cca08g01751 127 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 108 - -
Cca08g01751 127 Pfam Transcription factor S-II (TFIIS) 75 102 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cca08g01751 127 Pfam RNA polymerases M/15 Kd subunit 4 39 IPR001529 GO:0006351
Cca08g01751 127 SUPERFAMILY Zinc beta-ribbon 51 113 - -
Cca08g01751 127 SUPERFAMILY Zinc beta-ribbon 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01751 Cca-Chr8 49474646 49477783 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01751 K03017 - mnt:112091205 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01751 08 49474646 49477783 Cca08g01751 08 49474646 49477783 ECH
Cca11g02708 11 54458331 54462846 Cca08g01751 08 49474646 49477783 PCT