Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02659 ATGTTCTTCTCCGGCGATCCTTCTACGCGGAAGCGCGTCGATTTGGGAGGTCGCAGTTCGAAGGAAAGGGACCGGAAGAACCTTCTGGAACAGACGCGAGTTGAACGCAACCGCCGATTGTGGCTGCGCCAGCAGAACTCTGCTGCACTCAAAATTCAGAAATGCTTCAGAGGGCGAAAAGCTGTCAGAACTGAACAGTCTTTGTTGCGAGAGCAGTTCTATAAAGCCTATGGGAAGTATTGCCAGAATGTGGACAGGAATTCTTTTGGTCCAGATTCTGATTTCCTCTGTCAGTTCCTCTATTTCTTTAAGGCAGACAATATTGATGACTTTTTAATTCTTGTTCAAATATGCCGGTTGCTTTGGTGGTTTGTTCAGGATAATGGGGATGTTGTGAAACTTTTTGCAGGGGTGGATTACTCTTCTACATGTGCTTTGGCGAACTACCGAGTGAAACAATTTACACATGCTTGTATTCATGCACTGCATCAAAATAGATATCAGTTAAAAGATCAGCTTCTATTGACTCCTGAGGAATTGAATGTGTCAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTAATCGCAAATTGCCATGGAGCTGTAGGATAGTAGAATATCTTTTTCAAAACAATGCAGTCGGCCTACTCAGAGAGATCATTCTCACAGGAAAGGATAATGCAGAAAATTATTTTTCCATCGGCAAGGGATCATCATTAGAGCGTGTGCTTACAGCTGTAATATGTCATGTTGGTCAAAGGCCATGTATCTGTTCAAATATTAATCCAAGAAATAGCCTTGCATCACAGATCATCACAATTCCTTTCTTGTGGCATCTTTTCCCAAATTTACAACAGATTTTTGCAGCAGAGGACCTGAGCCAATGTTACATTCATCAAATGGCAAAATTTGGGCAAAACCTGATCAATTTGCTACCTAAGGATATATCAAATGAATTTCCTAGCTATGCGTGTATGCTTGGAAATATATTAGAAATTGCTGGAATTGCTTTGTCTCATCCTCACTGTTCATTTGATATGGCCATAGACCTTGCAGCTGTCACTACATTTTTGCTGGAGGCACTCCCATCTGTAAAAACTTCTCATAGTAGAGAAAGTTCTATGATTGCTGAGGATGATATGACTGGAGATGATGAAGTCATGGAAATAGCTTTGGATAGGAAATTGGAGCAGCAAATTTATTATGCCATAAATCCTCGCATCCTTCTGCAACTGACAAATATATTATTTAAAGGGATTTCATCTGTCAATGGTTCAGATTATGGACCCAATGATAGAGATGCTACAGCTCTTGATGCGATTTGTGGGTTTTTGTATGTTACCTTCAACAAGCTGCCACTTGAACGGATCATGACTGTACTTGCTTACAGAACTGAACTTGTTCCATCGCTTTGGAATTTTATGAAGCAGTGTCATGAGAACCAAAAATGGTCATCATACCTCTCAAATGATGCACCTGGTTGGCTGTTACCTCTGGCTGTATTTTGTCCTGTCTACAAGCACATGCTTATGATTGTTGATAATGAAGAATTTTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGAAGCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATACCACATCTGCTAATTCGGTAAAATCTGTTCCAGTTAGTTCAGCTAGTAAGGGGCAGTCTGTTCAGGCCATACAAGACAGAGTTAGCATTGTAGTCTATGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGCGGCAGTTTACATCCCCTAGTAACTTCCATGCCGATGGAGTGAATGACCTATTTATCTCTCAGGCTGTAATAGAAAATGCACGAGCAAATGAAATTTTGAAACAGGCCCCATTCTTGATACCATTTACAAGCAGGGTTAAAATATTATCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGATCTGAGGCTGTATTTACTAGAAACCAGTTCAGAATAAAACGAGAACGTATTTTGGAAGACGCTTATGATCAAATGAGCCAGTTGTCAGAATTAAACCTTCAGGGATTGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGCCTGGAATTGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAGACAGCAGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGAACAACATTTCCAATTTTTCCACTTCCTTGGCACTCTTCTTGCAAAGGCCATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTACCTTCCTTGGACCCAGAATTATATCGTCATCTCATGTTTCTCAAGCATTATAAAGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAATTGCTTCCTGGAGGAAGGAACCTACGTGTCACTAATGAGAATGTCATTACTTTTATTCATCTTGTAGCTAATCACCGCCTGAATTTTCAGGTGAAGTTTTTTTTTTTAATGGACTGCATCTTGTACTACAAATCAATCCATCAGGATTGGATAGATATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCCTAGATATTGATGATCTGCGGCTGCACACCAACTATGCAGGAGGCTATCAGAGTGAGCATCATGTTATTGAGACGTTTTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTCCGATATCTTGAACCTTTGTTTTGCATACAAAGGGCTTCTAGTAATGCATCTGATGAATCACTTGACCGATTGCCAACATCGGCTACTTGTATGAATCTACTAAAGCTTCCGCCTTATACAAGTAAGGAGCAATTGGAAACCAAATTACTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAA 3081 0.3995 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAALKIQKCFRGRKAVRTEQSLLREQFYKAYGKYCQNVDRNSFGPDSDFLCQFLYFFKADNIDDFLILVQICRLLWWFVQDNGDVVKLFAGVDYSSTCALANYRVKQFTHACIHALHQNRYQLKDQLLLTPEELNVSAIPLLEVLVLLINRKLPWSCRIVEYLFQNNAVGLLREIILTGKDNAENYFSIGKGSSLERVLTAVICHVGQRPCICSNINPRNSLASQIITIPFLWHLFPNLQQIFAAEDLSQCYIHQMAKFGQNLINLLPKDISNEFPSYACMLGNILEIAGIALSHPHCSFDMAIDLAAVTTFLLEALPSVKTSHSRESSMIAEDDMTGDDEVMEIALDRKLEQQIYYAINPRILLQLTNILFKGISSVNGSDYGPNDRDATALDAICGFLYVTFNKLPLERIMTVLAYRTELVPSLWNFMKQCHENQKWSSYLSNDAPGWLLPLAVFCPVYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHTTSANSVKSVPVSSASKGQSVQAIQDRVSIVVYELLSQLQDWNNRRQFTSPSNFHADGVNDLFISQAVIENARANEILKQAPFLIPFTSRVKILSSQLAAVRQRHGSEAVFTRNQFRIKRERILEDAYDQMSQLSELNLQGLIRVTFVNEFGVEEPGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLAKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLMFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQVKFFFLMDCILYYKSIHQDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYQSEHHVIETFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQRASSNASDESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02659 1026 CDD HECTc 664 1024 IPR000569 GO:0004842
Cca11g02659 1026 SMART hect_3 681 1026 IPR000569 GO:0004842
Cca11g02659 1026 Pfam HECT-domain (ubiquitin-transferase) 721 1026 IPR000569 GO:0004842
Cca11g02659 1026 Gene3D Hect, E3 ligase catalytic domains 666 904 - -
Cca11g02659 1026 Gene3D Hect, E3 ligase catalytic domain 908 1025 - -
Cca11g02659 1026 SUPERFAMILY Hect, E3 ligase catalytic domain 659 1018 IPR035983 GO:0004842
Cca11g02659 1026 MobiDBLite consensus disorder prediction 1 28 - -
Cca11g02659 1026 ProSiteProfiles HECT domain profile. 685 1026 IPR000569 GO:0004842
Cca11g02659 1026 PANTHER BNAC01G43970D PROTEIN 1 1026 - -
Cca11g02659 1026 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Cca11g02659 1026 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1026 IPR044611 GO:0000209|GO:0061630
Cca11g02659 1026 Gene3D Hect, E3 ligase catalytic domain 790 869 - -
Cca11g02659 1026 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02659 Cca-Chr11 53924182 53964863 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02659 K10589 - ccaj:109810993 1891.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02659 11 53924182 53964863 Cca11g02659 11 53924182 53964863 ECH
Cca11g02659 11 53924182 53964863 Cca08g01802 08 50340422 50367867 PCT