Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01802 ATGTTCTTCAGCGGCGATTCCTCTACTCGTAAGCGCGTTGATTTAGGAGGTCGAAGCTCGAAGGAAAGGGACAGAAACAAGCTTCTAGAACAGACGCGATTGGAGCGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGCACTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTAGTAAGAACAGAACAGTCTAAACTGCGAGAGAAATTCCTTAGAGTCTATGGGAAGAACTGCCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGAGTGGGGATGTTGTGAGACTTTTTGCTGGTATGGATTACTCATCCACATGTGCTTTGGTGAACTACCGAGTGAAGCAGTTTGTATATACTTGTATTCGTGCTGTACATCAGAATAGAAATCAGTTGAAGGATCAGCTTTTATTGACTACGAAGGAATCTAATGCATCAGCCATTCCTTTATTGGAAGTCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAGGATAGTAGGATCTGTGTCTCAAAACAATGCATTTGGCCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAAGGATCATCATTGGAGCATGTGCTTAGCGTTGTAATATGTCACATTGGTCAGAAGCCATGCATTTGTTCACATACTGATCCAGTATATAGCTTCTCATCACAGATCCTTACAATTCCTTTCCTGTGGCATGTTTTTCCAAACTTAAAACAGGTATTTGCAGAACAGGGCCTGAGCCAACATTACATTCATCAAATGGCAACATGTGTGCCAAATCTGATTAATTCTCTACCTAAGGATATATCAGATGAATTTCCTACATATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAATTGCTTTGTCTCGACCTGACTGTTCCTTTTATATGGCCATAGACATTGCTGCTGTTACTACATTTTTGCTGGAGTCACACCCATCTCTGACAAGATCTGATGATAGTGAGAATTCTAAAAATGCTGATGATGAAATGACCGGTGAAGATGAAGTCATGAAAGTAGCTTTGGATAGGAAATTGAATCAACAAATTTGTAACGCCATAGATACTCGCTTCCTTTTGCAACTGACAAATATATTGTTTAGAGATTTTTCATCTGTCAATGGTTCAGATCATGAACCAAATGATAGGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGATTTTTATATGTTGTCTTCAACACATTGCCACTTGAAAAGATTATGACTGTGCTTGCCTACAGAACTGAACTTGTTCCTATACTTTGGAAATTTATGAAACGGTGCCACGAAAATAAAAAATGGTCATCTTTGTCTGAACGGTTATCATACCTCTCAGGTGATGCTCCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCACATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAACCACTATCACTGAAGGATATTAGAAGCCTTATCATTTTGTTAAGGCAGGCTCTGTGGCAGCTATTGTGGGTGAATCATACCACATCTTCTAATTCGGTAAAATCTGTTCCAGTTAGCACAGCTAGTAAAAAACAGTCTGAAGCCATTCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTCCTGTCCCAGCTGCAAGATTGGAACAACAGACGAGAGTTTACATCCCCCAGTGACTTCCATGCTGATGGGGTGAATGACTTCTTTATCTCTCAGGCTGTCATGGAAAATACACGAGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATTTTTACTTCTCAACTGGCAGCTGCTAGGCAAAGACATGGATCTCAAGCTATTTATACTAGAAACCGGTTCAGAATACGGAGGAATCATATTTTGGAAGATGCTTATAATCAGATGAGTCAGTTGTCAGAAGATGATCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATAGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGACTATTTAAGGAAACAGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATCTCCAGTTTTTTCACTTTCTTGGTACCCTTCTAGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCTTTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCCTTGATCCAGAATTATATCGTCATCTTATCTTTCTAAAGCATTATAAGGGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTTCGTGTCACTAATGAGAATGTCATTACTTTTATCCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATCCGGCAACAAAGTTCTCATTTCCTAAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTTTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCTGCATACAAACTATGCAGGAGACTATCATAGTGAGCATTATGTTATTGAGATGTTCTGGGAAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTAGGGGACCATTGCTTGGATTCCGATACCTTGAACCCTTGTTTTGCATACAAAGGGCTGGTGGTAATGCTTCGGAGGAAGCTCTTGACCGATTACCGACATCAGCTACTTGTATGAATCTACTAAAGCTTCCACCTTACAAAAGTAAAGAGCAACTGGAAACCAAATTACTGTATGCCATAAATGCTGATGCTGGGTTTGATCTGAGTTAA 3096 0.3976 MFFSGDSSTRKRVDLGGRSSKERDRNKLLEQTRLERNRRLWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFLRVYGKNCQNLDRNAFGPDSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQESGDVVRLFAGMDYSSTCALVNYRVKQFVYTCIRAVHQNRNQLKDQLLLTTKESNASAIPLLEVLVLLIDPKLPWSCRIVGSVSQNNAFGLLREIILTGKDNAENCIYSEKGSSLEHVLSVVICHIGQKPCICSHTDPVYSFSSQILTIPFLWHVFPNLKQVFAEQGLSQHYIHQMATCVPNLINSLPKDISDEFPTYACLLGNILETGGIALSRPDCSFYMAIDIAAVTTFLLESHPSLTRSDDSENSKNADDEMTGEDEVMKVALDRKLNQQICNAIDTRFLLQLTNILFRDFSSVNGSDHEPNDREVAAVGAVCGFLYVVFNTLPLEKIMTVLAYRTELVPILWKFMKRCHENKKWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLLWVNHTTSSNSVKSVPVSTASKKQSEAIQQRVSIVVSELLSQLQDWNNRREFTSPSDFHADGVNDFFISQAVMENTRANEILKQAAFLIPFTSRVKIFTSQLAAARQRHGSQAIYTRNRFRIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYKGDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRLHTNYAGDYHSEHYVIEMFWEVLKGFSLENKKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNASEEALDRLPTSATCMNLLKLPPYKSKEQLETKLLYAINADAGFDLS 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01802 1031 Pfam HECT-domain (ubiquitin-transferase) 726 1031 IPR000569 GO:0004842
Cca08g01802 1031 Gene3D Hect, E3 ligase catalytic domains 671 909 - -
Cca08g01802 1031 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Cca08g01802 1031 Gene3D Hect, E3 ligase catalytic domain 913 1030 - -
Cca08g01802 1031 PANTHER BNAC01G43970D PROTEIN 1 1031 - -
Cca08g01802 1031 Gene3D Hect, E3 ligase catalytic domain 795 874 - -
Cca08g01802 1031 SMART hect_3 688 1031 IPR000569 GO:0004842
Cca08g01802 1031 SUPERFAMILY Hect, E3 ligase catalytic domain 660 1023 IPR035983 GO:0004842
Cca08g01802 1031 ProSiteProfiles HECT domain profile. 690 1031 IPR000569 GO:0004842
Cca08g01802 1031 CDD HECTc 669 1029 IPR000569 GO:0004842
Cca08g01802 1031 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g01802 1031 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 1031 IPR044611 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01802 Cca-Chr8 50340422 50367867 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01802 K10589 - gmx:100787467 1923.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01802 08 50340422 50367867 Cca08g01802 08 50340422 50367867 ECH
Cca11g02659 11 53924182 53964863 Cca08g01802 08 50340422 50367867 PCT