Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02658 ATGGCGTCTCTGTCTCTGCAATTCAGCGGCCTCAGGTGTTCTCCACTCTCCTCTTCCATCTTCTCCAAACCCTCTCTTTTCACTCAACAATCCCATAAGCGCCTTTCAATTCCCATACTCAACTCCATAGCAATATCCAATGCTCAGAACAAAGAGAGAGTCAAACTCAAACAACTCTTCCATGAAGCCTACGAGAGATGCCGCACTGCTCCCATGGAGGGAGTTTCCTTCACCATCGAAGACTTCACTGCCGCTCTCGACAAGTACGACTTCGATTCTGAAGTTGGCACCAAGGTTAAAGGCACTGTGTTCTACACAGATGCCAATGGAGCAGTTGTTGATATCACTGCAAAGTCTTCAGCATATTTGCCACTTCAAGAGGCGAGCATCCGTAGGGTTAAGCACGTGGAAGAAGCTGGCATAGTTGCTGGGTTGAGAGAGGAGTTTTTGATCATTGGTGAGAATGAAGCAGATGATAGCTTGATCTTGAGTTTGAGGTCTATCCAGTTTGATCTTGCATGGGAACGTTGTCGACAGCTTCAGGCAGAAGATGTTATTGTCAAGGGTAAGATTGTGGGGGCAAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGGCTTAGAGGGTTTGTTCCATTGTCACAAATATCAACGAACACAAATGTAGAAGAGCTTCTTGAAAAGGAGCTTCCTCTTAAGTTTGTGGAGGTAGATGAGGAACAATCTAGACTTGTTCTGAGTAACCGCAAGGCCATAGCTGGCAACCAGGCACAGCTAGGAATTGGATCAGTAGTTACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGTCTCCTTCATGTTAGTCAGATAAGTCATGACCGTGTAACGGATATTTCAACTGTACTTCAGCCTGGTGACATACTAAAGGTGATGATCTTAAGTCATGATCGAGAGAGAGGTCGAGTAAGTCTCTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATCCGCAATCCAAAGCTTGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCAGACATGCTTAGGTTCCAGCCTGAGAGTGGATTGACTCTCAGCAGTGATGGGATCCTGGGACCATTTACTTCAGACTTGCCTGAAGAGGGACTGGATCTGAGTGAGGTGCCACCAGCTGAAGAATGA 1233 0.4696 MASLSLQFSGLRCSPLSSSIFSKPSLFTQQSHKRLSIPILNSIAISNAQNKERVKLKQLFHEAYERCRTAPMEGVSFTIEDFTAALDKYDFDSEVGTKVKGTVFYTDANGAVVDITAKSSAYLPLQEASIRRVKHVEEAGIVAGLREEFLIIGENEADDSLILSLRSIQFDLAWERCRQLQAEDVIVKGKIVGANKGGVVAEVEGLRGFVPLSQISTNTNVEELLEKELPLKFVEVDEEQSRLVLSNRKAIAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPFTSDLPEEGLDLSEVPPAEE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02658 410 Gene3D - 79 176 IPR012340 -
Cca11g02658 410 SUPERFAMILY Nucleic acid-binding proteins 183 251 IPR012340 -
Cca11g02658 410 Gene3D - 177 255 IPR012340 -
Cca11g02658 410 PANTHER 30S RIBOSOMAL PROTEIN S1 1 410 - -
Cca11g02658 410 Coils Coil 346 366 - -
Cca11g02658 410 MobiDBLite consensus disorder prediction 383 410 - -
Cca11g02658 410 SUPERFAMILY Nucleic acid-binding proteins 260 339 IPR012340 -
Cca11g02658 410 ProSiteProfiles S1 domain profile. 96 166 IPR003029 GO:0003676
Cca11g02658 410 CDD S1_RPS1_repeat_ec2_hs2 184 248 - -
Cca11g02658 410 Pfam S1 RNA binding domain 182 246 IPR003029 GO:0003676
Cca11g02658 410 Pfam S1 RNA binding domain 260 329 IPR003029 GO:0003676
Cca11g02658 410 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 1 410 - -
Cca11g02658 410 ProSiteProfiles S1 domain profile. 184 248 IPR003029 GO:0003676
Cca11g02658 410 SUPERFAMILY Nucleic acid-binding proteins 91 191 IPR012340 -
Cca11g02658 410 SMART S1_6 259 329 IPR022967 -
Cca11g02658 410 SMART S1_6 182 248 IPR022967 -
Cca11g02658 410 SMART S1_6 94 166 IPR022967 -
Cca11g02658 410 CDD S1_RPS1_repeat_hs4 261 329 - -
Cca11g02658 410 PRINTS Ribosomal protein S1 signature 96 114 IPR035104 -
Cca11g02658 410 PRINTS Ribosomal protein S1 signature 114 128 IPR035104 -
Cca11g02658 410 PRINTS Ribosomal protein S1 signature 187 203 IPR035104 -
Cca11g02658 410 PRINTS Ribosomal protein S1 signature 232 252 IPR035104 -
Cca11g02658 410 ProSiteProfiles S1 domain profile. 261 329 IPR003029 GO:0003676
Cca11g02658 410 Gene3D - 256 333 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02658 Cca-Chr11 53919337 53923214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02658 K02945 - gmx:100812847 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02658 11 53919337 53923214 Cca11g02658 11 53919337 53923214 ECH
Cca11g02658 11 53919337 53923214 Cca08g01804 08 50385745 50390044 PCT