Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01804 ATGACGATGGCGATGACGGCGTCTCAGCTGCGGTGGGGGTGGAGGCCGCCGCCCAAGCAGCAACGGCGTCGTGTGCTTCCGGTAGTCTGTTCCATCGCCATAGAGAACGCGCAGAACAAAGAGAGAGCGAAACTCAAGAAACTCTTCGAAGAAGCCTACGAGAGGTGCCGCACTGCTCCCACCGAAGGCGTCTCCTTCAGCCTCCAACAATTCACCGACGCTCTCGACAAGTACGACTTCAACGCTGAAATTGGCACCAAGGTTAAGGGCACTGTTTTTGCCACAGATGCCAGTGGAGCTTATGTGGACATTACTGCAAAGTCAACAGCTTACTTGCCTCTGCAAGAGGCTTGCATCCACAGAATTAAGAATGTGGAAGAAGCAGGTATAGTTCCTGGCTTGAGAGAGGAATTTGTGATCATTGGTGAGAATGAAGCGGATGATAGCTTGATCTTGAGTTTGAGATCTATCCAGTATGACCTTGCATGGGAACGCTGTAGACAACTTCAAACTGAAGATGCTGTTGTCAAGGGTAAGGTTGTTAATGCAAACAGAGGAGGTCTAGTGGCTCAAGTGGAATGCCTTAAGGGGTTTGTTCCATTTTCACAGATATCAGCGAAATCTACCGGAGAAGAGCTTCTAGAGAAGGAGATTCCTTTTAAGTTTGTGGAGGTGGATCAGGAACAGTCTAGACTTGTCCTCAGTCACCGCAAAGCTGTGGCTGAGAACCAAGGACAGCTAGGAATTGGATCAGTAGTCACTGGCTCTGTTCAAAGCATAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATCAGTGGCCTCCTTCATGTCAGTCAGATCAGTCATGACCGTATAACTGATATTGCAACTGTTCTTCAACCTGGTGATATTCTGAAGGTGATGATCTTAAGTCATGACCGGGAGAGAGGACGAGTAAGTCTTTCCACTAAGAAGTTGGAACCCACACCTGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCAGAGGAGATGGCTCAGACATTCAGACAGAGAATCGCCCAAGCAGAAGCAATGGCTCGTGCTGATATGCTTAGGTTCCAGCCAGAGAGTGGATTAACTCTCAGCAGTGACGGGATATTAGGACCACTTACTTCAGACTTGCCTCCAGAGGGACTGGATCTGAGTGAGGTACCCCCAGCAGAAGATATGATTGAGAATTGA 1212 0.4851 MTMAMTASQLRWGWRPPPKQQRRRVLPVVCSIAIENAQNKERAKLKKLFEEAYERCRTAPTEGVSFSLQQFTDALDKYDFNAEIGTKVKGTVFATDASGAYVDITAKSTAYLPLQEACIHRIKNVEEAGIVPGLREEFVIIGENEADDSLILSLRSIQYDLAWERCRQLQTEDAVVKGKVVNANRGGLVAQVECLKGFVPFSQISAKSTGEELLEKEIPFKFVEVDQEQSRLVLSHRKAVAENQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIATVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPPEGLDLSEVPPAEDMIEN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01804 403 CDD S1_RPS1_repeat_hs4 250 318 - -
Cca08g01804 403 Gene3D - 247 326 IPR012340 -
Cca08g01804 403 ProSiteProfiles S1 domain profile. 85 155 IPR003029 GO:0003676
Cca08g01804 403 Gene3D - 68 165 IPR012340 -
Cca08g01804 403 SUPERFAMILY Nucleic acid-binding proteins 76 179 IPR012340 -
Cca08g01804 403 Coils Coil 335 355 - -
Cca08g01804 403 CDD S1_RPS1_repeat_ec2_hs2 173 237 - -
Cca08g01804 403 MobiDBLite consensus disorder prediction 374 403 - -
Cca08g01804 403 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 23 399 - -
Cca08g01804 403 SUPERFAMILY Nucleic acid-binding proteins 249 328 IPR012340 -
Cca08g01804 403 Gene3D - 166 246 IPR012340 -
Cca08g01804 403 SUPERFAMILY Nucleic acid-binding proteins 172 240 IPR012340 -
Cca08g01804 403 Pfam S1 RNA binding domain 171 237 IPR003029 GO:0003676
Cca08g01804 403 Pfam S1 RNA binding domain 249 318 IPR003029 GO:0003676
Cca08g01804 403 ProSiteProfiles S1 domain profile. 173 237 IPR003029 GO:0003676
Cca08g01804 403 ProSiteProfiles S1 domain profile. 250 318 IPR003029 GO:0003676
Cca08g01804 403 SMART S1_6 248 318 IPR022967 -
Cca08g01804 403 SMART S1_6 83 155 IPR022967 -
Cca08g01804 403 SMART S1_6 171 237 IPR022967 -
Cca08g01804 403 PANTHER 30S RIBOSOMAL PROTEIN S1 23 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01804 Cca-Chr8 50385745 50390044 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01804 K02945 - gmx:100806905 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01804 08 50385745 50390044 Cca08g01804 08 50385745 50390044 ECH
Cca11g02658 11 53919337 53923214 Cca08g01804 08 50385745 50390044 PCT