Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02654 ATGTCGCAGCCTTCAATGAAACGGCTACATTTAACTCAAGGTTTACTGAAAATGAAGAAGTGGTATGGAGGCCTGTTGATAATGGCTCTGGGTATGATGTTGTTTTTCCTCTACAACCTCAAAGGAATTCAGCCAGAGAAGCAGTCAGCAAAACAGTCAGCATACAGTTTCTTCAATAACCATACACTACTGGATGATTATATTAACGGAAACAGCAATCCTCCAGTAAACTCTTCCAAGGTGGAAATAAAAAGGGTACTAACACCAACAAAAAGGCCATTTTTGGTACATGTTGCAGGGCTTGATGATCTGTATGACATGAAAAAATTATCTAAAGGAGAGATGAATGCTGTCCTTATTTGGGATTCCTTGCGTTCCCTGTTGTCAAGGTCAGATGCTTTGGCTGAAACAGCTCAAGGAGTTAAAGAGGCTTCTGTGGCATGGAAAGAATTGCTATCCACTGTTGAACAGCACCAAACATCTAAGATGGATGGCCCAGAAAATCAAAACTGCCCATTCTCTGTGACCACAACTGGTAAGGCTGTACCAGATAGAGGAATCTCTCTTGATCTCCCTTGTGGTCTGGTTGTAGATTCTTCTATTACACTGATTGGAATCCCTAATGGACAAAACAGAAGCTTCCAGATTGACCTTGCCGGGCAGGAGCTAGAAGGGGAGCCAAATCCTCCAATTATTTTGCATTATAATGTGAGTCTTCCTGGAGAAAACATAACAGAGGAGCCGTATATTGTTCAAAATACATGGACTAGTGATTTAGGGTGGGGAAAAGAGGAAACGTGTCCTGCTCGTGCTTCTGCCAATATTCAGAAAGTTGATGGACTTGTTCCCTGCAATGTACAAGCTGTCAGAAGTAACAACGAAGGGAATGTAAATGTCAGTCAACCTGCTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCACATAGAACTGCGAATTTCCCCTTTGCTGAGGGTAATCCTTTCACTTCCACATTGTGGGTTGGTTTAGAGGGCTTTCATATGACTGTCAATGGAAGGCATGAAACATCTTTTGCATACAGGGAGAAGCTTGAACCATGGTTAGTCAGCAGTATTAAGGTAGCAGGCAGTTTAAGTCTCTTATCAATCCTAGCTAAAGGTTTACCTGTTACTGAAGATAATGATATAGTTGTCGATGTTGAGAATCTGAAGGCTCCTTCTATCTCCAGAAAAAGGCTTGTTTTGTTGATTGGAGTATTCTCTACCGGAAACAACTTTGAGCGTCGCATGGCTTTGAGGAGGTCTTGGATGCAATATGAGGCTGTACGTTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTTCACAAGAACAGTAGGGTTAATTTTGAGTTATGGACTGAAGCTCAAGCATATGGAGATATTCAATTAATGCCTTTCGTAGATTATTATAGTTTGATTTCTTTGAAGACAATTGCGATTTGCATTATGGGGACAAAAATCATTCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTGTTAGGATTGATGAGGTACTTTCTGGTCTTAAAGGAAAGCCATCTGAAGGCCTCTTGTACGGTCTCATATCTTCTAAATCATCTCCTCAGAGAGACGAAGACAGCAAGTGGTACATCAGTGAGGAGGAATGGCCATATGATACATACCCACCATGGGCACATGGTCCTGGCTATATTATTTCTCGAGACATAGCAAAATTCGTTGTTCATGGCCACCAAGAAAGAAAACTCAAGCTCTTTAAATTAGAAGATGTTGCCATGGGCATATGGATTGAACAGTTCAAGAATGGTGGTAAAGAAGTGCATTATGTGAATGATGAGAGGTTTTACAATGCTGGATGTGAATCAAATTATGTACTTGCCCATTATCAAAGCCCAAGGATGGTGCTATGCCTTTGGGAGAAATTGCAGAAAGAACATCAGCCAGTATGCTGTGAGTAG 1968 0.4106 MSQPSMKRLHLTQGLLKMKKWYGGLLIMALGMMLFFLYNLKGIQPEKQSAKQSAYSFFNNHTLLDDYINGNSNPPVNSSKVEIKRVLTPTKRPFLVHVAGLDDLYDMKKLSKGEMNAVLIWDSLRSLLSRSDALAETAQGVKEASVAWKELLSTVEQHQTSKMDGPENQNCPFSVTTTGKAVPDRGISLDLPCGLVVDSSITLIGIPNGQNRSFQIDLAGQELEGEPNPPIILHYNVSLPGENITEEPYIVQNTWTSDLGWGKEETCPARASANIQKVDGLVPCNVQAVRSNNEGNVNVSQPASDIPSNISSESAHRTANFPFAEGNPFTSTLWVGLEGFHMTVNGRHETSFAYREKLEPWLVSSIKVAGSLSLLSILAKGLPVTEDNDIVVDVENLKAPSISRKRLVLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVAVRFFIGLHKNSRVNFELWTEAQAYGDIQLMPFVDYYSLISLKTIAICIMGTKIIPSKYIMKTDDDAFVRIDEVLSGLKGKPSEGLLYGLISSKSSPQRDEDSKWYISEEEWPYDTYPPWAHGPGYIISRDIAKFVVHGHQERKLKLFKLEDVAMGIWIEQFKNGGKEVHYVNDERFYNAGCESNYVLAHYQSPRMVLCLWEKLQKEHQPVCCE 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02654 655 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 106 647 - -
Cca11g02654 655 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 187 380 IPR001079 GO:0030246
Cca11g02654 655 SMART Gal_bind_lectin_2 191 379 IPR001079 GO:0030246
Cca11g02654 655 Gene3D - 181 378 - -
Cca11g02654 655 Pfam Galactosyltransferase 421 603 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca11g02654 655 CDD GLECT 191 377 IPR001079 GO:0030246
Cca11g02654 655 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 106 647 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca11g02654 655 SUPERFAMILY Concanavalin A-like lectins/glucanases 189 380 IPR013320 -
Cca11g02654 655 Pfam Galactoside-binding lectin 189 378 IPR001079 GO:0030246
Cca11g02654 655 Gene3D - 395 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02654 Cca-Chr11 53897762 53904679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02654 16 655 Glycosyltransferase AT3G06440 51.084 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02654 K20843 - gmx:100816729 1178.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02654 11 53897762 53904679 Cca11g02654 11 53897762 53904679 ECH
Cca11g02654 11 53897762 53904679 Cca06g00739 06 19869707 19876238 PCT