Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00739 ATGAAGAGGGGTAGTAAACTAGACCCGTTTGTGAAACCCAACAGGCTCACACTTTTTCACATTTTCATGGTGGTGTTGCTCGTTTACTTGCTCTTCATGAGCTTTGAAATCGTTGTCGTGTTCATAGCTGGGCTTGGATTAAAAAATAGCACCGTTTTCCTCACTGACGCAGTGTCGATGCCTGTGTCGCTGTCCCTTGAAGAATTGCACAAGGGACTCAAAATTCGAGGACCCAGAGGGCTAAAGTTGGAGAAAGTCTCCACTTTGAGGTTCAACAAGAGCTTCACCGAGGGTTTGAAACTGCACAAGGTGGCGCGACATGCATGGGTGGCAGGGGAGAAGCTTTGGAGGGAAATGGAGAATGAGAAAACAGAGAACTTGAGGAACATGTTTAAGGTTATCGGAAATGGGTCGGACTCATGCCCAGAATCGATTTCCATTTCAGGGGTGGAGTTCCAAGAGAGGTTTAAGGGGGTGATGGTGTTGCCGTGCGGGCTAAAACTTTGGTCGCACGTGACTGTGGTGGGTACACCGCGATGGGCACGTGCTGAAAGGGACCCTAAGATAGCGATTGTGAGGGATGGGGATGAGGCATTGATGGTGTCTCAGTTCATGATAGATTTGCAAGGGTTGAAGGTCGATGAGAAAGAGGAGCCTCCAAGGATTTTGCATTTCAATCCAAGGTTGAGAGGGGATTGGAGTGGGGAGCCTGTGATTGAGCAGAACACTTGTTATAAGATGCAATGGGGTTCTGCTCTCAGGTGTGAGGGGTGGAAGTCTCACACGGATGAGGAAACTGTTGATGGGCATGTGAAATGTGAAAAGTGGATTCGTGATAACAAGCAGCATTTTGAAGAGTGGAAGGAAACATGGTGGCAAAACAGATTGATAGGAAGAAAAAATGAGGCGACTGTAGATTGGCCATATCCTTTTGCAGAGGGCAAGTTATTTGTTCTGACAATAAGTGTTGGCATAGAAGGTTACCATGTTAGTGTGGACGGGAGACATGTGACATCTTTTCCCTATCGCGTGCATGCAAAGAAGGATATAAATGTGGACATAAAGAAAGAAGCAGAGTATTTTGGTGATATTGTTATAGTCCCATACATGGATCATTATGACCTTGTTGTGTTGAAAACCATAGCTATATGTGAATATGGGATTCATACTGTGGTTGCCAAGTATATCATGAAATGCGATGATGACACATTTGTGAGAGTGGATTCTATCTTAAACGAAGCAAGACAAGTTCAAAGGAGAAGTCTCTACATGGGAAATATGAATTACCACCATAGGCCTCTTCGCTATGGGAAATGGGCTGTAACTTATGAGGAATGGGTAGGCAAAGAATATCCTATCTATGCTAATGGTCCAGGCTACTTAATCTCAGCTGACATTGCTCAATTCGTTGTATATGAATTTGAGAAGCGTAGATTAAAGTTATTTAAAATGGAGGATGTGAGCATGGGAATGTGGGTGGAGCAGTTCAACAACTCAGGACCAGTAGAGTATGTGCACAACTTGAAGTTCTGCCAATTTGGGTGCTATTATGATTACTACACTGCACATTATCAATCACCACGACAAATGATATGCATGTGGGAAAAATTGCGACATCAAGGAAAACCACTTTGTTGCAACATGAGATGA 1650 0.4406 MKRGSKLDPFVKPNRLTLFHIFMVVLLVYLLFMSFEIVVVFIAGLGLKNSTVFLTDAVSMPVSLSLEELHKGLKIRGPRGLKLEKVSTLRFNKSFTEGLKLHKVARHAWVAGEKLWREMENEKTENLRNMFKVIGNGSDSCPESISISGVEFQERFKGVMVLPCGLKLWSHVTVVGTPRWARAERDPKIAIVRDGDEALMVSQFMIDLQGLKVDEKEEPPRILHFNPRLRGDWSGEPVIEQNTCYKMQWGSALRCEGWKSHTDEETVDGHVKCEKWIRDNKQHFEEWKETWWQNRLIGRKNEATVDWPYPFAEGKLFVLTISVGIEGYHVSVDGRHVTSFPYRVHAKKDINVDIKKEAEYFGDIVIVPYMDHYDLVVLKTIAICEYGIHTVVAKYIMKCDDDTFVRVDSILNEARQVQRRSLYMGNMNYHHRPLRYGKWAVTYEEWVGKEYPIYANGPGYLISADIAQFVVYEFEKRRLKLFKMEDVSMGMWVEQFNNSGPVEYVHNLKFCQFGCYYDYYTAHYQSPRQMICMWEKLRHQGKPLCCNMR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00739 549 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 345 549 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca06g00739 549 Pfam Galactosyltransferase 351 496 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca06g00739 549 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE-LIKE PROTEIN 345 549 - -
Cca06g00739 549 Gene3D - 143 276 - -
Cca06g00739 549 Pfam Galactoside-binding lectin 159 351 IPR001079 GO:0030246
Cca06g00739 549 SMART Gal_bind_lectin_2 162 361 IPR001079 GO:0030246
Cca06g00739 549 SUPERFAMILY Concanavalin A-like lectins/glucanases 160 349 IPR013320 -
Cca06g00739 549 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 11 343 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca06g00739 549 Gene3D - 287 525 - -
Cca06g00739 549 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE-LIKE PROTEIN 11 343 - -
Cca06g00739 549 CDD GLECT 162 355 IPR001079 GO:0030246
Cca06g00739 549 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 373 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00739 Cca-Chr6 19869707 19876238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00739 337 549 Glycosyltransferase AT1G27120 71.028 1.39e-110 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00739 K20843 - gmx:100803219 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00739 06 19869707 19876238 Cca06g00739 06 19869707 19876238 ECH
Cca11g02654 11 53897762 53904679 Cca06g00739 06 19869707 19876238 PCT