Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02641 ATGGTTTCCATCTCTTTCTCTTTTTCTTCTTCCATAGTTCCCACTCCATTTCCCCTCGACAAATCCACCAAAACCCGCGCCCAAAATCCCATCTTTCGGGTCACCCGTTTCGCCATTTCAGCTCCTCCTTCCAATTCCGTTGTCAAAAAGAGGCACTGGAAACAAGGAGAGTTTCCTGGTACTTCCGAAACATCGTTGCCCCACAGTACGAGGAGGACCCCCATTAAGAACATCAAGAAGAAATTGGAGAAAAAGAATGAGGCAAAGGCATGGGTCAACACCGTCACCGAATCCTTATCTGAACGCATCGACAAGAAGCAGTGGCTTCAAGCCCTTCAGGTATTTGATATGCTTAGAGAACAAACCTTTTACCAACCCAAAGAAGGGACTTACATGAAACTTATTGTGTTGCTTGGTAAATCTGGTCAACCTCACCGTGCTCATCAGCTTTTTACCACAATGATTGAAGAGGGTTTAGACCCTACTCCCGCACTGTACACGGCGTTGCTCTCGGCGTATTGTAGGAGCAACTTGATTGATGAGGCATTTTTGGTTCTTAATGAGATGAAGAAGCTTCCTCTTTGCCAGCCTGATGTTTTCACTTACAGCACCTTGATTAAAGTTTGTGTGGATGCTTTCAAGTTTGATTTGGTTGAGTTGCTGTATGAAGAAATGGCTGAAAGGTCAATCATGCCAAACACGGTTACTCAGAACATTGTTTTGAGTGGTTATGGCAAGGCGGGGAAGTTTGACCTGATGGAGAAAGTGCTGTCCAGCATGCTGGAGAGCACTACATGCAAGCCTGATGTTTGGACAATGAACACAATCATCAGTGTCTTTGGTAATATGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAGTTCCGTAATTTTGGTATAGAACCTGAGACACGCACTTTTAATATTTTGATTGGCGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGTAAGCTGCAATTTCCATGGACAACCTCTACTTATAACAATGTGATTGAGGCATTTGCAGAAGCAGGTGATGCAAAGCACATGGAGTGTACATTTGATCAGATGCGGGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAATGGTTATGCAGGTGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTCGCTTGGCCGGAAAGTTTGAGATACCCGAGAATATAGAATTTTATAATGCAGTCTTATCTGCGTGTGCAAAAGCAGAGGATTTGATGGAAATGGAGAGAGTTTTCAAGCGTATGAAAGATAGTCAATGTCAGCCAGACGACACAACATACTCCATCATGATCGAGGCATATAGAAAAGAGGGTATGAATGACAAGATATACTATTTGGAGCTGGATAAGAAGACTATGATGACTGATGATAAACAAGTGAGCCAGTTTGAGAATGAAATCTTTAGTTGA 1473 0.425 MVSISFSFSSSIVPTPFPLDKSTKTRAQNPIFRVTRFAISAPPSNSVVKKRHWKQGEFPGTSETSLPHSTRRTPIKNIKKKLEKKNEAKAWVNTVTESLSERIDKKQWLQALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLDPTPALYTALLSAYCRSNLIDEAFLVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPNTVTQNIVLSGYGKAGKFDLMEKVLSSMLESTTCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKHMECTFDQMRAEGMKADTKTFCCLINGYAGAGLFHKVISSVRLAGKFEIPENIEFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYSIMIEAYRKEGMNDKIYYLELDKKTMMTDDKQVSQFENEIFS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Cca11g02641 490 PANTHER ATPASE EXPRESSION PROTEIN 3 29 480 - -
Cca11g02641 490 Pfam PPR repeat 238 263 IPR002885 -
Cca11g02641 490 Pfam PPR repeat 130 159 IPR002885 -
Cca11g02641 490 Gene3D Tetratricopeptide repeat domain 364 488 IPR011990 GO:0005515
Cca11g02641 490 Gene3D Tetratricopeptide repeat domain 64 224 IPR011990 GO:0005515
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 268 IPR002885 -
Cca11g02641 490 PANTHER OS03G0309800 PROTEIN 29 480 - -
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cca11g02641 490 Gene3D Tetratricopeptide repeat domain 225 363 IPR011990 GO:0005515
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Cca11g02641 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 272 303 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 307 335 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 413 444 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 130 162 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 235 270 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 165 192 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 342 374 IPR002885 -
Cca11g02641 490 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Cca11g02641 490 Pfam PPR repeat family 340 386 IPR002885 -
Cca11g02641 490 Pfam PPR repeat family 166 209 IPR002885 -
Cca11g02641 490 Pfam PPR repeat family 268 315 IPR002885 -
Cca11g02641 490 Pfam PPR repeat family 409 455 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02641 Cca-Chr11 53673304 53675654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02641 129 460 Glycosyltransferase AT1G05670 24.179 3.01e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02641 - - gmx:100786610 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02641 11 53673304 53675654 Cca11g02641 11 53673304 53675654 ECH
Cca11g02641 11 53673304 53675654 Cca08g01283 08 38506397 38511632 PCT