Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01283 ATGGCTCCAATGTCACTCTCCTTTTCTTCTTCCATTCTTCCTTCTCCCATTTCCCATACCAAATCCAACACAAACCCCATTACCCAAGACCCCATTTTTCGGGTCACTCGCGTCTCAAAAACCGCTGTCTCTGCCTCTTCTACCCGAAGACCAGTTCCAGCGACGAAAATCAGACCTCCGAAAGAAATTCCGGAAGAATTGTTTTTCGAGAGTACGGagaagaagacactcaagaagaagaagaaaaaggagaaaaagaagaGCAGTAAGGTCTGGGTCCACTCTCTCCCCGAAGTCTTATCCCATAGGATTCACAAGAAGCACTGGGTTATAGCCCTCGAGTTGTTTGACATGCTTAGAGACCAACCCTATTACCAACCCAGAGAAGATACTTACATGAAACTCATTGTATTGCTTGGAAAATCTGGCCAACCCCATCGCGCCCATCAGCTTTTTAAATCTATACATGAAGATGGTTGTGAAAGTACTGAGCTTTACACAGCCTTAATTGCAGCATATTGTCAGAACAAACTGGTTGATGAAGTGTTTTCGATTCTTGATGAGATGAGGAATCTCCCTTGTTGCCAGCCTGATATTTTCACTTACAGTACCTTGATAAAAGCTCTTGTGGAGGCCTTGCAATTTGAAATGGTTGAGTTGCTGTATGATGAAATGGCTAAAAGATCTATCATGCCAAACACTCTCACCCAGAACATCGTTGTAAGTGGTTATGGTAAGGCTGGGAGGTTTGATCAGATAGAGAAAATAGTGTCAAGTATGATAGAGAGCACCACGTGCAAGCCTGATGTTTGGACAATGAATGCAGTCATCAGTTCCTTTCGTGATAAGGGTCAAATTGATATGATGGAGAAATGGTATGAGAAATTTTGTAGTTTTGGAATACAACCACAAAGGAGCACTTTTAACATTTTAATTGCAGCTTATGGTAATAAAAGAATGTATGACAAAATGTCATCAGTTATGCAGTCTATGCGCAAGGCAAACTGTCCATGGACGACCTCAACTTATAACAATGTGATTGAGGCATTTGCGGCCgagctagaagccgagaggaaggagttcggcgcataccgggagagggctaggagcaaggtgctctctcagcatgaaactggtttcgcccaagcggctcggcaatcccggtattttggaagcctgcctgtggacttccaatttgatatgaccatggacttctatcgggagaaatttgtcaatctgaccgaaatcccgccgaacgaacaaccggacactgaagttcctGTTCGCAATGAGGCTGAACCGAGTGGCGACGGCCATGTGCGGGAGGAAGTAGCCAAGCCGGAGCCTTCGAACCAAGGGGAGCCCGAGGCATAG 1374 0.3544 MAPMSLSFSSSILPSPISHTKSNTNPITQDPIFRVTRVSKTAVSASSTRRPVPATKIRPPKEIPEELFFESTEKKTLKKKKKKEKKKSSKVWVHSLPEVLSHRIHKKHWVIALELFDMLRDQPYYQPREDTYMKLIVLLGKSGQPHRAHQLFKSIHEDGCESTELYTALIAAYCQNKLVDEVFSILDEMRNLPCCQPDIFTYSTLIKALVEALQFEMVELLYDEMAKRSIMPNTLTQNIVVSGYGKAGRFDQIEKIVSSMIESTTCKPDVWTMNAVISSFRDKGQIDMMEKWYEKFCSFGIQPQRSTFNILIAAYGNKRMYDKMSSVMQSMRKANCPWTTSTYNNVIEAFAAELEAERKEFGAYRERARSKVLSQHETGFAQAARQSRYFGSLPVDFQFDMTMDFYREKFVNLTEIPPNEQPDTEVPVRNEAEPSGDGHVREEVAKPEPSNQGEPEA 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01283 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 268 IPR002885 -
Cca08g01283 457 TIGRFAM PPR: pentatricopeptide repeat domain 307 339 IPR002885 -
Cca08g01283 457 TIGRFAM PPR: pentatricopeptide repeat domain 131 162 IPR002885 -
Cca08g01283 457 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Cca08g01283 457 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Cca08g01283 457 TIGRFAM PPR: pentatricopeptide repeat domain 165 198 IPR002885 -
Cca08g01283 457 MobiDBLite consensus disorder prediction 1 30 - -
Cca08g01283 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cca08g01283 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Cca08g01283 457 PANTHER OS03G0309800 PROTEIN 1 361 - -
Cca08g01283 457 MobiDBLite consensus disorder prediction 415 457 - -
Cca08g01283 457 Gene3D Tetratricopeptide repeat domain 226 388 IPR011990 GO:0005515
Cca08g01283 457 Pfam Pentatricopeptide repeat domain 221 280 IPR002885 -
Cca08g01283 457 Pfam PPR repeat 131 160 IPR002885 -
Cca08g01283 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Cca08g01283 457 PANTHER ATPASE EXPRESSION PROTEIN 3 1 361 - -
Cca08g01283 457 MobiDBLite consensus disorder prediction 426 449 - -
Cca08g01283 457 Pfam PPR repeat family 306 351 IPR002885 -
Cca08g01283 457 Pfam PPR repeat family 165 210 IPR002885 -
Cca08g01283 457 Gene3D Tetratricopeptide repeat domain 69 225 IPR011990 GO:0005515
Cca08g01283 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01283 Cca-Chr8 38506397 38511632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01283 112 358 Miscellaneous Gene Families AT4G11690 21.754 1.74e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01283 - - gmx:100776657 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01283 08 38506397 38511632 Cca08g01283 08 38506397 38511632 ECH
Cca11g02641 11 53673304 53675654 Cca08g01283 08 38506397 38511632 PCT