Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02627 ATGTACGCGGCGGAGGTTTTCGGCGTCTTGGCCGTGCGCGGCAGCGATTCCTCGACGGCAGTGGCTGCCGCCACCCGAAAGTGCTTCAAAATCGCAGCTTTCGCAACACCCACTTCCAGTAACGGCGTGAGTTTGAGGTGGGCCAAGGGTTTGGCGCCTTGTGGCTGCACCGTTGACTCAAAGTCCGTCGGCGACGACGTTTTCTCGGTAACGCCGTCGAACAAGTCCGACGTGGACTACCTCGGGGAGAGCACCAAAGGTGATTTGAACGTCAAGTTGGAGCATCTTGAGGCTTTTGGAATTGATGGTCATGCTTCTTTAGAAGGTCCAATTGAGAAAGTGGCCAGGTCAGAGGCAAGAGAAGCTGAAGATTTGCTAAAAGACTTGGGCATTCCGAGCCCTTCTTCATCCAGAAATTCACCTCGTGGAATATTCTGTAGCCGTACATTGAATCTGCGGTCCATCAGTGCCATTGGATATGACATGGACTATACCTTGATCCAATATAATGTGACGGCTTGGGAAGGGAGGGCTTATGACTACTGTATGGAAAACCTTAAAAATATGGGTTTCCCTGTTGATGGACTTGCCTTTGATCCTGACCTGGTAATTAGAGGCCTTGTCATAGACAAAGAGAAAGGCAATTTGGTTAAAGCTGATCGATTTGGTTACATAAAAAGAGCCATGCATGGCACCAAAATGTTGTCTACTAGAGCTGTGAGTGAGATGTATGGGAGAGAACTGGTGGACCTGCGAAAAGAGAGTCGATGGGAGTTTCTCAATACTCTGTTTTCCGTGTCAGAAGCTGTGGCCTACATGCAGATGGTTGACAGATTGGATGATGGGACTATACCAGCAGATCTTGCTCTTGATTATAAGGGGCTATATAAGGCTGTTGGAAAAGCTCTCTTTTGGGCACATGTTGAAGGTCGCCTTAAGAGTGAGATCATGTCCAAGCCTGAACTGTTTGTGGAGCCTGATCCGGAATTACCTTTGGCACTTTTGGATCAGAAAGAGGCTGGCAAAAAACTTCTGTTAATTACCAACTCAGATTTTCTTTACACAGACAAAATGATGAGGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTTGGCGAGATTTATTTGACATTGTAATTGTCTCAGCTAGAAAACCAGAGTTCTTCCAAATGTCACATCCCATGTATGAAGTGGTCACAGGCGAGGGTCTTATGCGTCCATGCTTCAAGGCTCAAACTGGCGGTTTATACTCAGGGGGAAGTGCACAGATGGTTGAAAATTCCCTAGATATTCATGGAGATGAGATATTGTATGTTGGCGACCATATTTACACTGATGTCAGTCAATCCAAAGTCCATTTGCGATGGCGAACAGCATTGATTTGTCGAGAACTGGAAGAAGAGTATAGTGCCTTGATTGGTAGCCGGAGTTATAGAGAATCATTGGTGGAGCTTATAAATCAAAAGGAAGTTGTAGGGGATCTCTTTAACCAACTTCGGCTGGCTTTACAGAGGCGAAGCAAAGACCGTCCTGCTCAAACCCTAGCAGCAACTAACATGAATGATGAGGACCTCACTGATAGCATGCAAAAGCTACTTATCGTTATGCAAAGACTCGATGAGAAAATTGCTCCAATGCTGGAGGCAGATGGGGAGCTCTTCAGTTCAAGGTAA 1677 0.4615 MYAAEVFGVLAVRGSDSSTAVAAATRKCFKIAAFATPTSSNGVSLRWAKGLAPCGCTVDSKSVGDDVFSVTPSNKSDVDYLGESTKGDLNVKLEHLEAFGIDGHASLEGPIEKVARSEAREAEDLLKDLGIPSPSSSRNSPRGIFCSRTLNLRSISAIGYDMDYTLIQYNVTAWEGRAYDYCMENLKNMGFPVDGLAFDPDLVIRGLVIDKEKGNLVKADRFGYIKRAMHGTKMLSTRAVSEMYGRELVDLRKESRWEFLNTLFSVSEAVAYMQMVDRLDDGTIPADLALDYKGLYKAVGKALFWAHVEGRLKSEIMSKPELFVEPDPELPLALLDQKEAGKKLLLITNSDFLYTDKMMRHSFNRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPMYEVVTGEGLMRPCFKAQTGGLYSGGSAQMVENSLDIHGDEILYVGDHIYTDVSQSKVHLRWRTALICRELEEEYSALIGSRSYRESLVELINQKEVVGDLFNQLRLALQRRSKDRPAQTLAATNMNDEDLTDSMQKLLIVMQRLDEKIAPMLEADGELFSSR 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02627 558 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 144 483 IPR008380 -
Cca11g02627 558 PANTHER HAD-SUPERFAMILY HYDROLASE, SUBFAMILY IG, 5'-NUCLEOTIDASE 63 558 - -
Cca11g02627 558 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 63 558 IPR008380 -
Cca11g02627 558 Pfam 5' nucleotidase family 144 535 IPR008380 -
Cca11g02627 558 Gene3D - 306 493 IPR023214 -
Cca11g02627 558 CDD HAD_cN-II 145 466 - -
Cca11g02627 558 SUPERFAMILY HAD-like 141 534 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02627 Cca-Chr11 53553372 53560792 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02627 - - gmx:100800826 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02627 11 53553372 53560792 Cca11g02627 11 53553372 53560792 ECH
Cca11g02627 11 53553372 53560792 Cca08g01295 08 38935715 38964693 PCT