Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02620 ATGAAGCAAAAACCGCCATCTTCACCAACCACTGCGTTGAAGAAGCAAAGTGACAAGTCCCTGCAGAGTCCACCACCGCCGCCACCACGCCTCAGGGCTTCTTCCAAGGCTCCAAAGTCACCGCCAGTGCCCCCAGAGTTGAAGAGCGTGTCAAGGGCCAAAAGGGGTGTTGTGAATGTTGGGTCTCAGAAGGTTGAAGAGGCTAAGGTGGTTGTTGTTGCTAGGCCTCGGCGAAGGGTTGGGGATTGCGGTTTgaggaagagtgaagaagatgataagcagaagaaggagttggaggagaagCTTGAGGTGAGTGAGAATTTCATCAAGAGTTTGCGGTCTGAGGTTGCGGAATTGAGGGAGGAATTGGATAGAGTTAAGAGATTGAATGTGGAGCTTGAGTCTCACAACACAAAACTCACTCGGGATCTTGCTGCTGCTCAAGCTAAGATTCCAACTGTTGGCACCGGCAACAATGGAAAGAAGGAGCCAATTGGAGGACACCAGAGTCCCAAATTTAAAGACATACAGAAACTCATTGCTCACAAATTGGAACAGTCTATGGTGAAAAAGGAAGGTACTCCTGAAGTAATTTTTTCTAAAGCATCAACCCCAGCTCCAACACCAAGTTATCATGCCATTCCTGAAACCACAAGCATAGGAATAAAATCTCCACACAATACATGCTTGCAACCACCACCGCTGTCACCACCAATAACAAGTGTAGGAAGAAAATCTCCACCCAACACATGCCTTCAGccacctccaccacccccgccaccaccaccaATTCCGTCCCGGCCTTTGGCAAAATTAGCTAACACCCAAAAGGCCCCTGCCATTGTTGAAGTATTTCAATCCTTAAAGAGTAGAGATGGGAAGATGGACTCAAAAGGATCGGTGAATCATCAGAGACCAGTAGCTATTAGTGCACACAGTAGCATTGTGGGAGAAATTCAAAACCGTTCAGCTCATCTTTTAGCAATAAGGACAGACATTGAAACAAAAGGAGAGTTCATTAATGAGCTCATAAAGAAAGTAGTAGATGCAGCATTCCAGGATATTGAAGAGGTCCTAAAGTTTGTGAATTGGCTTGATGGCAAACTATCATCACTGGCTGATGAACGCGCTGTCTTAAAGCATTTTAAGTGGCCTGAGAAGAAAGCTGATGCAATGCGAGAGGCAGCAGTCGAGTATCATGAGCTTAAAATCCTAGAACAGGAGATTTCTTCCTACAAGGATGACCCTGACATTCCATGTGGAGCTGCCTTAAAAAAGATGGCCAGCCTATTGGACAAGTCTGAGAGGAGCATACAGAGGCTAATCAAGCTAAGAAATTTGGTCATACATTCATATCAAGTGTACAACATTCCAACTGCATGGATGCTTGATTCTGGAATAACGAGCAAGATAAAACAGGCTTCCATGACTCTGGTCAACATGTACATGAAAAGAGTGACAATGGAGCTTGAATCCATTCAGAATTCAGACAGAGAATCAATTCAAGATTCTCTTCTGCTTCAGGGCGTGCGTTTTGCATATAGGGCTCATCAGTTTGTTGGAGGATTGGACTCAGAAACAATGTGTGCTTTTGAAGAGATAAGGCAACGTGTACCAGGACACCTAGCAGGGTCTCGAGAACTTTTGGCTGGCATACCATAA 1662 0.4284 MKQKPPSSPTTALKKQSDKSLQSPPPPPPRLRASSKAPKSPPVPPELKSVSRAKRGVVNVGSQKVEEAKVVVVARPRRRVGDCGLRKSEEDDKQKKELEEKLEVSENFIKSLRSEVAELREELDRVKRLNVELESHNTKLTRDLAAAQAKIPTVGTGNNGKKEPIGGHQSPKFKDIQKLIAHKLEQSMVKKEGTPEVIFSKASTPAPTPSYHAIPETTSIGIKSPHNTCLQPPPLSPPITSVGRKSPPNTCLQPPPPPPPPPPIPSRPLAKLANTQKAPAIVEVFQSLKSRDGKMDSKGSVNHQRPVAISAHSSIVGEIQNRSAHLLAIRTDIETKGEFINELIKKVVDAAFQDIEEVLKFVNWLDGKLSSLADERAVLKHFKWPEKKADAMREAAVEYHELKILEQEISSYKDDPDIPCGAALKKMASLLDKSERSIQRLIKLRNLVIHSYQVYNIPTAWMLDSGITSKIKQASMTLVNMYMKRVTMELESIQNSDRESIQDSLLLQGVRFAYRAHQFVGGLDSETMCAFEEIRQRVPGHLAGSRELLAGIP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02620 553 MobiDBLite consensus disorder prediction 151 171 - -
Cca11g02620 553 MobiDBLite consensus disorder prediction 21 45 - -
Cca11g02620 553 SUPERFAMILY Formin homology 2 domain (FH2 domain) 254 263 - -
Cca11g02620 553 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g02620 553 PANTHER F11A17.16 7 553 - -
Cca11g02620 553 Coils Coil 95 150 - -
Cca11g02620 553 MobiDBLite consensus disorder prediction 77 98 - -
Cca11g02620 553 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 7 553 IPR040265 -
Cca11g02620 553 MobiDBLite consensus disorder prediction 223 269 - -
Cca11g02620 553 MobiDBLite consensus disorder prediction 1 55 - -
Cca11g02620 553 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02620 Cca-Chr11 53419966 53425209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02620 - - gmx:100820135 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02620 11 53419966 53425209 Cca11g02620 11 53419966 53425209 ECH
Cca11g02620 11 53419966 53425209 Cca08g01296 08 38986018 38991678 PCT