Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02613 ATGGttgttgaaaccaaggatggaactgtctcagtagctaccgcgtttgctggtcaccaggaagCCGTGCAGGATAGAGACCACAAATTTTTGAGAAAAGCAGTTGAAGAAGCATATAAAGGGGTAGATTGTAAACATGGAGGCCCTTTTGGTGCTGTTATAGTTCACAATGATGAAGTAGTTGTTAGTTGTCACAACATGGTTCTGAGTAACACAGACCCAACTGCTCATGCTGAGGTGACAGCTATAAGAGAGGCTTGTAAGAAGCTTAAGAAGATAGAACTTTCAGATTGTGAAATATATACTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTAGAATTAAGAGGCTGGTTTATGGAGCAAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTCATTGCAGATGCATTGAGAGGTACTGGATTCTATCAGAAAGCAACGTTGGAAATCAAAAGAGCTGATGGTAACGAGGCCATCATTGCTGAAGAGGTTTTTGAGAAAACAAAGGAAAAATTCAAAATGTATTAA 549 0.3552 MVVETKDGTVSVATAFAGHQEAVQDRDHKFLRKAVEEAYKGVDCKHGGPFGAVIVHNDEVVVSCHNMVLSNTDPTAHAEVTAIREACKKLKKIELSDCEIYTSCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKATLEIKRADGNEAIIAEEVFEKTKEKFKMY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02613 182 SUPERFAMILY Cytidine deaminase-like 20 140 IPR016193 GO:0003824
Cca11g02613 182 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 2 181 - -
Cca11g02613 182 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 25 139 IPR002125 -
Cca11g02613 182 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 2 181 - -
Cca11g02613 182 Gene3D Cytidine Deaminase, domain 2 26 182 - -
Cca11g02613 182 CDD nucleoside_deaminase 31 138 - -
Cca11g02613 182 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 77 114 IPR016192 GO:0008270|GO:0016787
Cca11g02613 182 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 26 125 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02613 Cca-Chr11 53362186 53365412 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02613 - - gmx:100500436 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02613 11 53362186 53365412 Cca08g01302 08 39241564 39245296 PCT