Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01302 ATGGAAGAAGTTAACGTGGTTCAAACCAAGAATGGAACTGTCTCAGTAGCTTCTGCGTTTGCTGGCCATCAGGAAGCTATACAGCAAAGAGACCACAAATTTTTAAGAATTGCTGTTGAAGAAGCGTATAAAGGGGTAGAAAATGCAGATGGGGGTCCCTTTGGTGCTATTATAGTTTGTAATGATGAAATAGTTGCTAGTTGTCACAACATGGTTCTCAAGAACACAGACCCAACTGCTCATGCAGAAGTCACTGCAATAAGAAAGGCTTGTGAAAAGCTAAACCAGATAGAACTTTCAGACTGTGAAATATATGCTTCTTGTGAACCTTGTCCAATGTGCTTTGGAGCAATCCACCTTTCACGGGTTAAGAGGTTGGTTTATGGAGCGAAGGCAGAGGCAGCAATTTCTATAGGGTTTGATGACTTCATTTCGGATGCATTGCGAGGTACTGGATTCTATCAGAAAGCACAATTGGAGATTAAAAAGGCTGATGGAAAAGAAGCTAACATTGCTGAAGAAGTTTTTGAGAAAACAAAGGAAAAATTTCGAATGTATTGA 561 0.4011 MEEVNVVQTKNGTVSVASAFAGHQEAIQQRDHKFLRIAVEEAYKGVENADGGPFGAIIVCNDEIVASCHNMVLKNTDPTAHAEVTAIRKACEKLNQIELSDCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAISIGFDDFISDALRGTGFYQKAQLEIKKADGKEANIAEEVFEKTKEKFRMY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01302 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1 185 - -
Cca08g01302 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 151 IPR002125 -
Cca08g01302 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Cca08g01302 186 CDD nucleoside_deaminase 35 142 - -
Cca08g01302 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
Cca08g01302 186 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN-RELATED 1 185 - -
Cca08g01302 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Cca08g01302 186 Gene3D Cytidine Deaminase, domain 2 29 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01302 Cca-Chr8 39241564 39245296 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01302 - - gmx:100527067 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02613 11 53362186 53365412 Cca08g01302 08 39241564 39245296 PCT