Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02547 ATGATTGCAAAAACAAACATGAAGCCTATCATTGGCAAGTTGTACTGTTCATCGTCTCATACGGTGCTTGTGGTGAGGAAGAGGCCACACGTGGTGAATGGTGGGGGGTTTGTAGTCATGGATTGTAGTGCTCAGAGGGTTGTGTTCAAGGTCGATGGTTGTGGTGTTCGTGGCAAAAAGGGTGAGTTGATTCTAAGAGAAGGAGATGGAGACACTTTGCTCCTCATGCGTCGAAAGGGAGGCATGGTTGAGGCCCTGAGCATTTACAAGAAGTGGAAAGGTTACAGTGTAGACTATGAAGGATCACGGAAGCTGATTTTCAGCTTGAAAGAACCCAATTCTTGTTTGGTGAATAACAATGCAATCAGAATCTCCACTAGGAACCGAGAAAGGGACTTTAAGATCAGTGGCTATTTCCCGGATAAGTGTTGTAGCATTGTTGACTCTAAAGGCAACGAGGTAGCTCAGGTGGGAGTGATGAAGGAAGTGGAGGAATTGATGGAAAGCAAGGATTTGTACCATGTGGTGGTGAAACCTGGGATGGATCAAGCTTTTGTTTTTGGAATCATCGCTATCCTTGATTACATTTATGGCGAATCCACCCACTGCTAA 612 0.451 MIAKTNMKPIIGKLYCSSSHTVLVVRKRPHVVNGGGFVVMDCSAQRVVFKVDGCGVRGKKGELILREGDGDTLLLMRRKGGMVEALSIYKKWKGYSVDYEGSRKLIFSLKEPNSCLVNNNAIRISTRNRERDFKISGYFPDKCCSIVDSKGNEVAQVGVMKEVEELMESKDLYHVVVKPGMDQAFVFGIIAILDYIYGESTHC 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02547 203 PANTHER - 8 202 IPR007612 -
Cca11g02547 203 SUPERFAMILY Tubby C-terminal domain-like 9 197 IPR025659 -
Cca11g02547 203 PANTHER PROTEIN LURP-ONE-RELATED 6 8 202 - -
Cca11g02547 203 Gene3D - 9 201 IPR038595 -
Cca11g02547 203 Pfam LURP-one-related 11 192 IPR007612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02547 Cca-Chr11 52623006 52624418 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02547 - - gmx:100306504 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02547 11 52623006 52624418 Cca11g02547 11 52623006 52624418 ECH
Cca11g02547 11 52623006 52624418 Cca08g01370 08 41196836 41198637 PCT