Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02536 ATGCTTCCGCACCACGATAAAGCCGCCCTAACACCACCGCCTCCACTTCCCAATCCTAACATCGAAATCGCCTTCGGATCCTTCGACTCCGACATTCAGGCCCTCATCGGTGACTTCTTCGACCACTCCAGCCCCCAATTGCCCGCTCCCGACGCCACCACCACTAACAAGAGACCAAACGATGATCATTCCTACGACGCCCTTTCATTCAAGCGCGGTAGGATTAATGACAATGCCTCCGACTCCGACGCCAACTTTCAGATTCAAAACCCTATCCCTATCCCTGTCCCTCAACTTCACCATCACGATCACGCTCACGCTCACGGAGAAGGGGAACAGGAGCCCCCCTTGTTTGAAATCGATTTTCTCTCCAACGCTCTCCGCGAACCTGAATTGGTCTTGATGCACAGTTCAGACGATAACGCGGAGTCGGAAGCTGATGATGAACCTTACCTTCCGTTGTATGGTTACAGGAGGAATCGGACCATGGAACGCTTCCGAAGGATAGCCAAGGAAAACGCCACTCACTATGCTCGATTTAACGCTGCGACCGAAGGCGAATCGTCTCTCGCGGTTGCGCCGCGGGAAATTGACGATTCCGTCACTCCGTTTTCGATCGCTCTGAAGGCGATCAGAGAGCGAGCGACGAAGAAGGGGTGGGATGCGTGGGTTTTCAATAGTGAGAATCGACCAGGGGAGAAGAAGAGGGTTTTGGTTCCCTCTTTGCAAGAACTGTGCCTTGGAATTCTCGCGGATAATGCTGACGCCATGGTTTCGCTCGAGGGGGTTCCGGATGAGCTCAGACACAAGCTTTGCAAGCTGCTCTGTGACTCCAGAAAGATGAATTCTCGTTTTCTCGAGCTTCTTCTCAGTGGGTCTCCCTCGGAGATTCGCCTCAAAGATTGCTCGTGGTTGACGGAGGAACAGTTTGCCAAGTCTTTTCAAATGTGTGACACTGGAAGATTGGAGGTGCTGCAACTTGACCAGTGTGGACGGTGTATACCTGATTATGCATTGCTCGGTACTTTGAGACAATCACCAAATTGGTTGCCGAGATTAACTAGTCTGTCCCTCAGTGGTGCTTGCCGTCTTTCAGATAAGGGGTTGCAGGTGCTTGTTTCTTCTGCCCCACAACTGAGATCGATTAATCTAAGCCAGTGCTCCCTTCTCTCATCTGCCAGTATTCATATTTTGGCCAATTCATTGGGATCACTTTTGAAAGAGTTGTATCTCGATGATTGCTTAATCATTGATGCTGCACAAATTTTGCCAGCACTCAAGAAACTTGAACATTTAGAAGTGTTGTCATTGGCCGGCATTCAAACTGTCTCTGATGAGTTTATCAAGGAATACATTGTTGCACGTGGTCACAACATGAAGGAGCTTGTTTTAAAGGACTGTGAAAAATTAACCGATGCATCAATAAAAGTCATTGCTGAACACTGTCCTGGGTTGTGTGCACTTGATCTTATGTACTTGGACAAATTAACAGATTTATCCATAGGATATCTTGCAAATAGTTGTCGAACACTTCATACATTGAAGCTCTGCCGCAATCCATTCAGTGATGAAGCAATTGCTGCATTTTTGGAGATTACTGGAGAGTCCTTGAAAGAACTTTCACTGAATAATATTAAGAAGGTTGACCACCAAACAACCTTATCACTTGCGAGGCATGCAAAAAATTTGCAGATTCTAGATCTATCTTGGTGCCGGAATTTGACGGACAATGAGTTGGGTTTTATCGTAGATAGCTGCTTGTCACTGAGGTTGCTTAAGCTTTTTGGTTGCTCACTGGTAACAGATGCTTTTCTGAATGGGCACTCAAACCCAGAGATTCAGATCCTTGGATTGAAGATGTCTCCTTTATTGCAAAATGTCAAAGTGCCTGATCCCCATCAAGGGCCTTTGCGTTATTCATCAGTTTCGGTAGATAACTAG 1941 0.4704 MLPHHDKAALTPPPPLPNPNIEIAFGSFDSDIQALIGDFFDHSSPQLPAPDATTTNKRPNDDHSYDALSFKRGRINDNASDSDANFQIQNPIPIPVPQLHHHDHAHAHGEGEQEPPLFEIDFLSNALREPELVLMHSSDDNAESEADDEPYLPLYGYRRNRTMERFRRIAKENATHYARFNAATEGESSLAVAPREIDDSVTPFSIALKAIRERATKKGWDAWVFNSENRPGEKKRVLVPSLQELCLGILADNADAMVSLEGVPDELRHKLCKLLCDSRKMNSRFLELLLSGSPSEIRLKDCSWLTEEQFAKSFQMCDTGRLEVLQLDQCGRCIPDYALLGTLRQSPNWLPRLTSLSLSGACRLSDKGLQVLVSSAPQLRSINLSQCSLLSSASIHILANSLGSLLKELYLDDCLIIDAAQILPALKKLEHLEVLSLAGIQTVSDEFIKEYIVARGHNMKELVLKDCEKLTDASIKVIAEHCPGLCALDLMYLDKLTDLSIGYLANSCRTLHTLKLCRNPFSDEAIAAFLEITGESLKELSLNNIKKVDHQTTLSLARHAKNLQILDLSWCRNLTDNELGFIVDSCLSLRLLKLFGCSLVTDAFLNGHSNPEIQILGLKMSPLLQNVKVPDPHQGPLRYSSVSVDN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02536 646 SMART LRR_CC_2 560 585 IPR006553 -
Cca11g02536 646 SMART LRR_CC_2 586 607 IPR006553 -
Cca11g02536 646 SMART LRR_CC_2 456 481 IPR006553 -
Cca11g02536 646 SMART LRR_CC_2 508 532 IPR006553 -
Cca11g02536 646 SMART LRR_CC_2 376 401 IPR006553 -
Cca11g02536 646 SMART LRR_CC_2 350 375 IPR006553 -
Cca11g02536 646 SMART LRR_CC_2 482 507 IPR006553 -
Cca11g02536 646 MobiDBLite consensus disorder prediction 1 20 - -
Cca11g02536 646 SUPERFAMILY RNI-like 296 617 - -
Cca11g02536 646 Gene3D Ribonuclease Inhibitor 253 405 IPR032675 -
Cca11g02536 646 MobiDBLite consensus disorder prediction 40 64 - -
Cca11g02536 646 Gene3D Ribonuclease Inhibitor 533 629 IPR032675 -
Cca11g02536 646 Gene3D Ribonuclease Inhibitor 415 532 IPR032675 -
Cca11g02536 646 PANTHER UNCHARACTERIZED 149 641 - -
Cca11g02536 646 PANTHER F-BOX/LRR PROTEIN 149 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02536 Cca-Chr11 52509006 52513206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02536 K15082 - gmx:100798274 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02536 11 52509006 52513206 Cca11g02536 11 52509006 52513206 ECH
Cca11g02536 11 52509006 52513206 Cca08g01384 08 41492835 41499340 PCT