Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01384 ATGGTTCAAACCCCCAAGTCCTCTAAACCCGAAGCCATTTCCCCCCTCACTCCCGCCCAAACCCGCGAACCCTCCTCcctccccctccgccgccgcagcctccgcctcgcccccgccgccgattccgccgcTAGGGTTTCCGCCGGTTCCCAAGGGGGCCAAAAGGGAAACGGCTTCCTCAACTTAAGGTCGGGAAAGAAGGTTCTCAAGAGAACAATGACCGACGATTCAGAACCACAAGTTCAGAAGGCAAATAACCATGACTTACCAGAGAAGACTGCTGACGTGGCAGTTGCGGCTGATAGCAATGTCAACCTTGTAGCAGATAACTCCGACCCCGCCGCAACACCCGCTAGGGTTTCCACCGGTGACCGGAAGCGCAAAACTGACTCAACCGGTTCCCAACAAGAGGGATTTCTCAACTTAAGATCAGGGAAGAAGCCTCTCAAGAGACCAATAACGAACGATTCAGAAGAACAAGGAAATGATGATGACGTGGCAGTGGCGGTTGATGACAATGTGGTAACACCGGAATCCAGAGCCGAGAACTCAGGTATCAATGTCGACGTTATTGCAGATAATGTAGCATCGCGAGTTCGAACACGTTCTAGAAGCTCCAATGGAGGAGAGCGTGGTTCCGGTTCCGGTTACCGGATGGAACGGTTCCACGACATAGCGCGGGAAAACGCGTCGCGCTTCGCTCATTTCTTACCGGAAGAGGAACCCGATGACCGGTCAGCGCCGGTTCCCGAACCGGCGCCTGAGGAAATCGAGGACTGGCCCGGTCCTTTCTCCACGGCTATGAAGATCATCAGAGACCGAGGGACGAAGTTGCAAAACGCTGAAACGAGTTCGCAAGCGAGATTGTGTGAGTCTATTGCGTGGGTTCCCGAAGCGAAGAAGGGGAATGTAGGTGTTGGTGTTTCGGTTCCGTCGTTGCAGGAGATGTGTCTTAACATTCTTGCGAAGAATGTTGATGCGATTGCTTCGCTCGATAGTGTGCCTGATGCGCTGAGGCACCGGCTTAGCCACTTGCTCTGTGACTCGAGGAGAATTAATAATCACTTTTTGGAGCTTCTTGTGCGTGGAACTCCCACGGAGATTCGGCTCAGAGATTGCTCGTGGTTGACGGAGGAACAGTTTACAGAGTGTTTTCGAACTTGTGACACTGGGAAGTTGGTGGTACTGCAACTTGACCAGTGTGGGCGTTGTTTGCCTGATTATGTAATAGTAGCTACTTTGGCACAGTCACCAAGGCACTTATCTAGATTAACTACTCTATCCCTCAGTGGTGCATGCAGACTTTCCGATGGAGGTTTGCGCGAACTTGTTTCCTCTGCTCCAGCACTTAGATCAATAAATCTCAGCCAGTGCTCCCTTCTCACCTCAGCTAGTATTTATATTTTGGCTGAATCATTAAGATCTCTTCTGAAGGAGTTGTACCTTGATGATTGCCAAGGAATTGATGCTGCACTAATTGTGCCAGCACTAATTGAGCTTGAACATATAGAAGTGTTGTCAGTAGCTGGTATCCAAACTGTTTGTGATGAATTTGTCAAAAATTACATTGTTGCACGCGGGCAAAACATGAAAGAGCTTGTATTGAAGGACTGTACAAACTTGACCGATGTATCAATCAAAGTTATTGTTGAGCACTGTCCAGGATTATGCGTGCTTGATCTTATGAACCTGAGCAAATTAACAGACTTATCTGTAGGATATCTTGCAAATGGTTGTCGAACACTTCACACACTGAAGCTCTGCCGAAACCCATTCAGTGATGAAGCAATAGCTGCATTTGTGGAGACCACCGGAGGGTCCTTAAAGGAACTGTCACTTAATAATATTAAGAAGGTTGGTTACCACTCAACCATATCGCTTGCAAACCATGCAAAAAACTTGTATTCTCTAGATCTATCTTGGTGCAGAAATTTAACAGACAATGCATTGGGTTTGATTGTGGATAGCTGCTTGGCGCTGAGGTTACTTAAACTTTTTGGATGCAGTCAGGTAACAGATGCATTTGTCAATGGCCACTCAAACCCACAGATCCAGATAATTGGTTTGAAGATGTCTCCTGTGTTGCAACATGTCAAAGTGCCAAATCCTCATCAAGGTGCTTTGAATTATTCATCCGTCTCCGTAGTAGATATGGTATAA 2160 0.4606 MVQTPKSSKPEAISPLTPAQTREPSSLPLRRRSLRLAPAADSAARVSAGSQGGQKGNGFLNLRSGKKVLKRTMTDDSEPQVQKANNHDLPEKTADVAVAADSNVNLVADNSDPAATPARVSTGDRKRKTDSTGSQQEGFLNLRSGKKPLKRPITNDSEEQGNDDDVAVAVDDNVVTPESRAENSGINVDVIADNVASRVRTRSRSSNGGERGSGSGYRMERFHDIARENASRFAHFLPEEEPDDRSAPVPEPAPEEIEDWPGPFSTAMKIIRDRGTKLQNAETSSQARLCESIAWVPEAKKGNVGVGVSVPSLQEMCLNILAKNVDAIASLDSVPDALRHRLSHLLCDSRRINNHFLELLVRGTPTEIRLRDCSWLTEEQFTECFRTCDTGKLVVLQLDQCGRCLPDYVIVATLAQSPRHLSRLTTLSLSGACRLSDGGLRELVSSAPALRSINLSQCSLLTSASIYILAESLRSLLKELYLDDCQGIDAALIVPALIELEHIEVLSVAGIQTVCDEFVKNYIVARGQNMKELVLKDCTNLTDVSIKVIVEHCPGLCVLDLMNLSKLTDLSVGYLANGCRTLHTLKLCRNPFSDEAIAAFVETTGGSLKELSLNNIKKVGYHSTISLANHAKNLYSLDLSWCRNLTDNALGLIVDSCLALRLLKLFGCSQVTDAFVNGHSNPQIQIIGLKMSPVLQHVKVPNPHQGALNYSSVSVVDMV 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01384 719 MobiDBLite consensus disorder prediction 198 217 - -
Cca08g01384 719 MobiDBLite consensus disorder prediction 198 212 - -
Cca08g01384 719 Gene3D Ribonuclease Inhibitor 519 622 IPR032675 -
Cca08g01384 719 Gene3D Ribonuclease Inhibitor 306 518 IPR032675 -
Cca08g01384 719 SMART LRR_CC_2 579 603 IPR006553 -
Cca08g01384 719 SMART LRR_CC_2 527 552 IPR006553 -
Cca08g01384 719 SMART LRR_CC_2 631 656 IPR006553 -
Cca08g01384 719 SMART LRR_CC_2 657 678 IPR006553 -
Cca08g01384 719 SMART LRR_CC_2 421 446 IPR006553 -
Cca08g01384 719 SMART LRR_CC_2 605 630 IPR006553 -
Cca08g01384 719 SMART LRR_CC_2 553 578 IPR006553 -
Cca08g01384 719 SMART LRR_CC_2 447 472 IPR006553 -
Cca08g01384 719 MobiDBLite consensus disorder prediction 237 262 - -
Cca08g01384 719 PANTHER UNCHARACTERIZED 177 712 - -
Cca08g01384 719 MobiDBLite consensus disorder prediction 237 252 - -
Cca08g01384 719 Gene3D Ribonuclease Inhibitor 623 682 IPR032675 -
Cca08g01384 719 MobiDBLite consensus disorder prediction 1 27 - -
Cca08g01384 719 SUPERFAMILY RNI-like 368 676 - -
Cca08g01384 719 MobiDBLite consensus disorder prediction 1 167 - -
Cca08g01384 719 PANTHER F-BOX/LRR PROTEIN 177 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01384 Cca-Chr8 41492835 41499340 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01384 K15082 - gmx:100808150 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01384 08 41492835 41499340 Cca08g01384 08 41492835 41499340 ECH
Cca11g02536 11 52509006 52513206 Cca08g01384 08 41492835 41499340 PCT