Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02534 ATGATTCTCATTATCTCCCTCATTTTCTCTCTTCTCTCCTTCTCCCATGCTTCTGTCCTAGATTTCTGTGTTGCAGATTATGCAGCTCCTATTGGCCCTGCAGGATACTCCTGCAAGAAGCCTGCAAAGGTCACAGCTGATGATTTTGCCTTCAGTGGCCTTGGCGTTGCTGGCAATACCTCAAACATCATCAAAGCTGCAGTGACCCCTGCATTTGATGCTCAGTTTGCTGGTCTCAATGGCCTTGGCATTTCTGCGGCACGTTTGGACTTGGCACCAGGTGGAGTTATTCCACTCCACACTCATCCTGGTGCTTCAGAATTACTTGTTGTAGTACAAGGGAGCATCTTGGCTGGATTCATTTCTTCTGACAACACTGTCTACCTCAAAACTCTTAAGAAGGGGGATGTTATGGTGTTCCCTCAAGGCTTACTGCACTTCCAAATCAACGCAGGTGGTTCTCCAGCCCTGGCAATTGTAAACTTCAGTAGCTCCAATCCTGGTTTACAAATTCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACACCATTGATAGTAGAAACCACTTTCCTTGATGCTGCTCAGGTGAAGAAGCTTAAGGCTGTTCTTGGAGGCACAGGCTAA 627 0.4641 MILIISLIFSLLSFSHASVLDFCVADYAAPIGPAGYSCKKPAKVTADDFAFSGLGVAGNTSNIIKAAVTPAFDAQFAGLNGLGISAARLDLAPGGVIPLHTHPGASELLVVVQGSILAGFISSDNTVYLKTLKKGDVMVFPQGLLHFQINAGGSPALAIVNFSSSNPGLQILDFALFKSNFPTPLIVETTFLDAAQVKKLKAVLGGTG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02534 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Cca11g02534 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Cca11g02534 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Cca11g02534 208 CDD cupin_OxOx 15 204 - -
Cca11g02534 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Cca11g02534 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 204 - -
Cca11g02534 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Cca11g02534 208 SMART Cupin_1_3 52 198 IPR006045 -
Cca11g02534 208 Pfam Cupin 54 196 IPR006045 -
Cca11g02534 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 5 204 - -
Cca11g02534 208 SUPERFAMILY RmlC-like cupins 18 201 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02534 Cca-Chr11 52490094 52491192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02534 1 207 Miscellaneous Gene Families AT5G20630 70.192 2.81e-98 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02534 - - gmx:100800387 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02534 11 52490094 52491192 Cca11g02534 11 52490094 52491192 ECH
Cca11g02534 11 52490094 52491192 Cca08g01387 08 41541351 41544202 PCT