Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01387 ACACAAACAACATAATGAACAACGTTATTGCAATAATAGTGACACCCTCATTGGCTGTGAAATGAATGATTGGCCAATACTGATTGGTCGATGGAACAGCACAGTGCTAGATTTCTGTGTGGCAGACTACACTGCTCCCAATGGCCCTGCAGGGTACTCATGCAAGAAGCCTTCAAAGGTGACAGTGAATGACTTTGTCTACTCAGGCCTTGGAACTGCTGGCAACACCTCAAACATCATAAAAGCTGCAGTGACTCCAGCATTTGATGCTCAATTCCCTGGTGTCAATGGCCTTGGAATTTCCATTGCACGTTTGGACTTGGCACCTGGTGGCGTTATCCCACTTCACACACACCCTGGAGCCACGGAATTGTTGGTGGTTGTGACAGGTAGAATCTGCACAGGCTTTGTTGCTTCGGACAACACTGTGTACCTCAAAACTCTTGAAAAGGGTGACATCATGGTGTACCCTCAAGGCTTGTTGCACTTCCAAATCAACGCTGGTGGCTCTCCTGCCTTGGCCTTTGTGAGCTTCAGCAGTGCCAACCCTGGCTTGCAGATTCTCGACTTTGCTTTGTTCAAAAGTGACTTCCCCACTGAACTCATCACGGAAACAACTTTCATTGATGCTGCTGTGGTCAAGAAGCTTAAGGGTGTTCTTGGAGGCTCCGGTTAA 676 0.4778 HKQHNEQRYCNNSDTLIGCEMNDWPILIGRWNSTVLDFCVADYTAPNGPAGYSCKKPSKVTVNDFVYSGLGTAGNTSNIIKAAVTPAFDAQFPGVNGLGISIARLDLAPGGVIPLHTHPGATELLVVVTGRICTGFVASDNTVYLKTLEKGDIMVYPQGLLHFQINAGGSPALAFVSFSSANPGLQILDFALFKSDFPTELITETTFIDAAVVKKLKGVLGGSG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01387 224 PRINTS Germin signature 179 194 IPR001929 GO:0030145
Cca08g01387 224 PRINTS Germin signature 116 136 IPR001929 GO:0030145
Cca08g01387 224 PRINTS Germin signature 146 166 IPR001929 GO:0030145
Cca08g01387 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 30 220 - -
Cca08g01387 224 SUPERFAMILY RmlC-like cupins 34 217 IPR011051 -
Cca08g01387 224 CDD cupin_OxOx 33 220 - -
Cca08g01387 224 Pfam Cupin 69 212 IPR006045 -
Cca08g01387 224 Gene3D Jelly Rolls 32 223 IPR014710 -
Cca08g01387 224 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 30 220 - -
Cca08g01387 224 ProSitePatterns Germin family signature. 111 124 IPR019780 GO:0030145
Cca08g01387 224 SMART Cupin_1_3 68 214 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01387 Cca-Chr8 41541351 41544202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01387 33 223 Miscellaneous Gene Families AT5G20630 68.586 4.57e-95 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01387 - - gmx:100806553 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01387 08 41541351 41544202 Cca08g01387 08 41541351 41544202 ECH
Cca11g02534 11 52490094 52491192 Cca08g01387 08 41541351 41544202 PCT