Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02531 atgGCACAAATGGCTGGAATGGCAAAGGAAGAAGAGTCAGCTAGTCCTAGTTGGGGTGCTTCATTTTTTATGCAGACAAAAGAGGATGTCGCTAGAGCTGTTGCTGCTGCTGTTAACTCTCCAATGTCGTCAAAAGATGATAATAGTGGTAGCCAACTTCAAAGGCTGCAGTATCAAGTTGCAAAAATGTTAAAAGGCTTTTCACACACTCCTGATGTTGAAAACACAAATTACAATCCTGAAATCCTGACTAGTCTGAAGCGTCAATGGGCTGCAAACTTTCAGTTGCATTACATGGACCATAGGTCTTGGAAGGAGCCCTCACGACTGTTTGAGAGCATGGTGGTTGTTGGACTTCATCCTAATTGTAATGTTCAGGCACTACAAAGACAATATGTTGATAGAAAGTTTGAAGGCTCTGGTAAATTGAGAAGTGCACTTGGTTATCAGAATCAATCTCGTGTAGAACCCAATATTGAACCTCAGGTCTTGTTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAAAAGCAAGGATCTTCTTTCTTTCTGCTTCCCTGGAGGCTTAGAGGTACGTGCTGTTGAGAGAACCCCTTCCATGAGTGAGTTGAATGAAATTCTATTTGGTCAGGAACACCTTAAACAAAGGGATCTGTCATTTGTATTCAGGTTACAGGGTGCTGACTACTCAACACTGTATGGGAGTTGTGTCTTAGTTGAAGAACTAGTGCAAAAGCCCTCTGGATTGCTTTCTCTGATTTCTGATAAGCAGCCTTCTTACTCTTCTTTGAGACGAAATATATTAACCACTCAGAGATGTTACTGCATTCTTTCAAGGCTTCCAGCTTTTGAATTGCACTTTGGTGTATTGAATAGCCTCTTCACACAAGAAAGGCTGGAGCGGTTGACAAAAAGTGTTGGAGATTTAAATTTAGAATTTGTTGAAGGTAACTATAAGGAAGAAAACCCAGAGGGGTACTCAGAGTGTGTTTTGGTGAGTGATCGACCAAGAGAAGACAGTCTTGGGGGAAGTCCAAATTGTCCAATAACTTCTGAATCAGGAGTAAGAAATTCTACACCTGAAAACATTGTGGATGATGGTCAACCAGAGCACCTAATGGTTGATGGGGAGCTGCAGACATTTAAGGAGAGAATCAAGTATGACGATGTTGTGCCTACTGATCCTGTAAGTGATAGGACAACATCCAAAGAAGATTCTGGCCCTACAAATTCTGAAGATAGTGATCAGTATGGAGATGCTTTTGCAACCAACAAACAATCAGAAGAAAAACATTTACCAAATGCTATTTTGCCCCTCCTGCGCTATTGCCAGTATGAAAGTTCTGAATCATCTTGCAGTTTTCAAAGTTCGCCTTGTGAAGACAGAAATTTTAGGAGTGATGTTGATGATAATGAAACAGAAGAAGCATCTTTCTCTGGCCAAGATGATTTAAGTGACTTAAATGATATTCTTGAATGGGCTAAGGAAAATAACCATGGACCACTACAAATCATCAGCAAGTATTATCGTTTAACTTTCCCTGCCAGGGGCTCATCACTTACGTTTCATCCTTTGGAGCACTTACATCCCTTGGAATATCACAGACCAGCTGAGACAATTCAATGTCTTGCAGGTTCAACAGTTGATTTGAAAATGTCCAGTACTGGTCTGAAATTAGCTGATGCACATAATGCTCTTATGGTGGAAGAGGCAAATGCATTATCTGTATGGGCTGTAGCTTGCTTATGCGGTACATTGAGACTTGAAAATGTTTTAACATTTTTTGCAGGAGTTTTACTAGAGAAGCAGATAGTTGTTGTCTGTTCTAATTTGGGAATCCTATCTGCTTCAGTTTTATCAGTTATTCCACTAATCCAGCCTTACCGGTGGCAAAGTCTGCTAATGCCAGTTTTACCAAATGACATGCTTGAGTTTTTAGATGCACCTGTCCCTTATGTAGTTGGTATCAAGAACAAGCCCAGTGAAGTTCAGTCAAAGTTTACCAATGTTATTCTGGTTGATGCCAATAGAAACCAGGTGAAATCACCAACAATACCACAACTGCCAAGACAGAAAGAGCTAGTCTCTTCTTTACGTCCTTATCATGCAACTCTTGTTGGCGAAAGTTACTTGGGTAGGAGAAGGCCAGTATATGAATGCACGGAAGTGCAGATTGAAGCTGCAAAGGGGTTCCTTTCGGTGGTAAGATCTTACTTGGATTCTCTTTGCTGTAATATCCGTTCTCACACAATCACCAATGTACAATCCAATGACGATAAGGTTTCATTGCTTCTGAAGGAGAGTTTCATTGACTCATTCCCTTATCGTGATCGGCATTTTATGAAGCTTTTCGTGGATACACAGCTTTTTTCTGTACATACAGACCTTGTTCTCTCTTTCTTACAAAAGGAATAA 2415 0.4054 MAQMAGMAKEEESASPSWGASFFMQTKEDVARAVAAAVNSPMSSKDDNSGSQLQRLQYQVAKMLKGFSHTPDVENTNYNPEILTSLKRQWAANFQLHYMDHRSWKEPSRLFESMVVVGLHPNCNVQALQRQYVDRKFEGSGKLRSALGYQNQSRVEPNIEPQVLFVYPPEKQLPLKSKDLLSFCFPGGLEVRAVERTPSMSELNEILFGQEHLKQRDLSFVFRLQGADYSTLYGSCVLVEELVQKPSGLLSLISDKQPSYSSLRRNILTTQRCYCILSRLPAFELHFGVLNSLFTQERLERLTKSVGDLNLEFVEGNYKEENPEGYSECVLVSDRPREDSLGGSPNCPITSESGVRNSTPENIVDDGQPEHLMVDGELQTFKERIKYDDVVPTDPVSDRTTSKEDSGPTNSEDSDQYGDAFATNKQSEEKHLPNAILPLLRYCQYESSESSCSFQSSPCEDRNFRSDVDDNETEEASFSGQDDLSDLNDILEWAKENNHGPLQIISKYYRLTFPARGSSLTFHPLEHLHPLEYHRPAETIQCLAGSTVDLKMSSTGLKLADAHNALMVEEANALSVWAVACLCGTLRLENVLTFFAGVLLEKQIVVVCSNLGILSASVLSVIPLIQPYRWQSLLMPVLPNDMLEFLDAPVPYVVGIKNKPSEVQSKFTNVILVDANRNQVKSPTIPQLPRQKELVSSLRPYHATLVGESYLGRRRPVYECTEVQIEAAKGFLSVVRSYLDSLCCNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRHFMKLFVDTQLFSVHTDLVLSFLQKE 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02531 804 MobiDBLite consensus disorder prediction 344 364 - -
Cca11g02531 804 Pfam uDENN domain 161 238 IPR005113 -
Cca11g02531 804 Gene3D - 98 323 - -
Cca11g02531 804 SMART uDENN_cls 107 240 IPR005113 -
Cca11g02531 804 MobiDBLite consensus disorder prediction 385 410 - -
Cca11g02531 804 ProSiteProfiles Tripartite DENN domain profile. 145 804 IPR037516 -
Cca11g02531 804 Pfam DENN (AEX-3) domain 575 676 IPR001194 -
Cca11g02531 804 SMART DENN_cls 269 678 IPR001194 -
Cca11g02531 804 MobiDBLite consensus disorder prediction 385 418 - -
Cca11g02531 804 PANTHER DENN (AEX-3) DOMAIN PROTEIN 4 804 - -
Cca11g02531 804 MobiDBLite consensus disorder prediction 335 369 - -
Cca11g02531 804 Gene3D - 574 740 IPR043153 -
Cca11g02531 804 MobiDBLite consensus disorder prediction 451 481 - -
Cca11g02531 804 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 4 804 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02531 Cca-Chr11 52449696 52463553 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02531 - - gmx:100801645 1412.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02531 11 52449696 52463553 Cca11g02531 11 52449696 52463553 ECH
Cca11g02531 11 52449696 52463553 Cca08g01388 08 41586551 41600125 PCT