Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01388 ATGGAAACAAAAACGCAGCAGCAGAAAGAAACCGACGTTCCTGGTTGCCCCCAAACACTAGACTTTATCTCAGCCTTAACCctctctctctctctctctTTTCTATTATTTCATTTATTCCGCTGTTTCCAGAAGGAACAAATGGCTGGAATGACTAAGGAGGAAGAGTCAGGTAGTCCTAGCTGGGGTGCTTCATTTTTTATGCAGACAACGGAGGATGTGGCTAGAGCTGTCGCTGCTGCTATGAATTCTCCAAGACCATCTGTGATATATTCATCTAAAAATGATCATGGTGGCAGTCAACTTCAAAAACTGCAGCATCAAGTTACGAAAATGATAAAAGGATTTTCTCGCCCTTCTGATGTTCAATATGCAAATTACAATCCGGAAATCTTGACATCGCAGAAGCGTCAATGGGCTGAAAACTTTCAGTTGCAGTACTTGGACCATAGGTCTTGGAAGGAGCCAACAAGGCTGTTTGAAAGCATGGTTGTCGTTGGACTTCATCCTAATTGTGATATTCAGGCACTGCAAAGGCAATATTTTTCAAGAAAATCTGAAAGCCCTGGTAAATTGAGAAGTGCACTTGGCTATCAGAATCATTCCCGTGTAGAACCTAATCTAGAACCTCAGGTCTTATTTGTTTACCCTCCAGAAAAACAGCTGCCTCTTAAAGACAAGGATCTTTTCTCTTTCTGCTTCCCAGGAGGCTTGGAGGTTAATGCTGTTGAGAGAACCCCTTCCATGAGTGAGTTGAACGAAATTCTTTATGGGCAGGAACACCTTAAACAAAGGGACCTGTCTTTTGTATTTAGATTGCAGGGTGCTGATAATTCAACACTTTATGGGTGCTGTGTCTTAGTAGAAGAGTTAGTGCAAAAACCCTCTGGATTGCTCTCCCTGATTTCTGATAAGCAGTCAACTTATTCTTCTTGGAAACGCCATATATTAACCACACAGAGATGTTACTGCATTCTGTCAAGGCTCCCATTTTTTGAATTGCACTTTGGTGTATTGAATAGCATCTTCATGCAAGAACGGCTAGAGCGGTTGACAAGAAGTGTTGGAGATTTAAATTTAGAATACATTGAAGGTAGCTGTGAGGAAGAAAATTTGGGGGGAAATTCAGAGTGCATGTTGGTGAATGATAGATTGGAAGATAGACACAATGAAAATCCAAGGATTTCTCAATCAAGCCTAAGAAATTCCTCACCTGAGAACATTGAGGATGATAGTAATAATCCTGAGAAACAAATGCTTAATGAGGAGCTGCATACATTTAAGGAGGGAGTTGATGATCACAATGCTGTGCATATTGATCCTGAAACTGATAGAAAAATTGTCAAAGAATCTGTCCCTACAAATGTTGAAGATAGTGATTTGTATGGAGATGCTTTTGTAACAAACAAACAGTCAGAAGATAGGCGTTTACCAAATGCTATTCTACCACTTCTGCGGTATTGCCAGTATGAAAGTTCCGAATCTTCCTGCAGTTTTCAGTCTTCTCCTTGTGAAGACAGAAATTTTAGGAGTGATGCGGATGATACCGAGACAGAAGATGCTTCATTCTCTGGCCAAGAGGATTTAAATGACCTACATGATATTCTTGAATGGGCTAAGGCAAATAACTGTGGACCATTACAGATTATAAGTGAGTATTATAGCTTAGGTTGCCCTGCAAGGGGCTCGACACTTCGGTTTCATCCTTTGGAGCACCTGCATCCCTTGGAATATCACAGACCAGATGAGACAATTTTACATTTAGCTGGTACAACCTTTGATTTGAAATCTTGCAGTACCAGTCTGGAATTAGCAGAGGCATATAATTCTATTCTGGCTGAGGAGGAGGCAACTGCGTTATCTATATGGGCTGTAGCATGTATATGTGGTACCTTGAGACTTGAAAATGTGTTAACATTCTTTGCAGGAGCTCTACTGGAGAAGCAGACAGTTTTTGTCTGTTCTAATTTGGGAATCCTGTCTGCTTCAGTTTTATCAGTTATTCCACTAATTCGGCCCTACCAATGGCAAAGCTTGCTAATGCCAGTTTTACCAAATGACATGCTTGAGTTTCTGGATGCACCTGTCCCTTACATAGTTGGTATCAAGAACAAAACCAATGAAGTTCAGTCAAAGTTGACTAATAATGTTATCCTGATTGACGCCAACAGAAACCAGGTGAAGTCATCAACTATACCTCAACTCCCAAGGCAGAAAGAATTAATCTCTTCATTGCGTCCTTATCATGCAATTCTTGTGGGAGAAAGCTACTTGGGTAGTAGAAGGCCGGTGTTTGAATGCACGGAAGTGCAGATAGAAGCTGCCAAGGGGTTCTTATCGGTGTTGAGGTCTTATTTGGATTCCCTTTGCTATAACATTCGTTCTCATACTATAACCAATGTACAATCCAATGACGATAAGGTATCCTTGCTTTTGAAGGAGAGTTTCATCGACTCATTTCCTTATCGTGATCGGCCTTTCATGAAGCTTTTCGTGGATACACAGCTCTTCTCTGTGCATACGGATCTTGTTCTCTCTTTCTTCCAAAAGGAATAG 2556 0.4061 METKTQQQKETDVPGCPQTLDFISALTLSLSLSFLLFHLFRCFQKEQMAGMTKEEESGSPSWGASFFMQTTEDVARAVAAAMNSPRPSVIYSSKNDHGGSQLQKLQHQVTKMIKGFSRPSDVQYANYNPEILTSQKRQWAENFQLQYLDHRSWKEPTRLFESMVVVGLHPNCDIQALQRQYFSRKSESPGKLRSALGYQNHSRVEPNLEPQVLFVYPPEKQLPLKDKDLFSFCFPGGLEVNAVERTPSMSELNEILYGQEHLKQRDLSFVFRLQGADNSTLYGCCVLVEELVQKPSGLLSLISDKQSTYSSWKRHILTTQRCYCILSRLPFFELHFGVLNSIFMQERLERLTRSVGDLNLEYIEGSCEEENLGGNSECMLVNDRLEDRHNENPRISQSSLRNSSPENIEDDSNNPEKQMLNEELHTFKEGVDDHNAVHIDPETDRKIVKESVPTNVEDSDLYGDAFVTNKQSEDRRLPNAILPLLRYCQYESSESSCSFQSSPCEDRNFRSDADDTETEDASFSGQEDLNDLHDILEWAKANNCGPLQIISEYYSLGCPARGSTLRFHPLEHLHPLEYHRPDETILHLAGTTFDLKSCSTSLELAEAYNSILAEEEATALSIWAVACICGTLRLENVLTFFAGALLEKQTVFVCSNLGILSASVLSVIPLIRPYQWQSLLMPVLPNDMLEFLDAPVPYIVGIKNKTNEVQSKLTNNVILIDANRNQVKSSTIPQLPRQKELISSLRPYHAILVGESYLGSRRPVFECTEVQIEAAKGFLSVLRSYLDSLCYNIRSHTITNVQSNDDKVSLLLKESFIDSFPYRDRPFMKLFVDTQLFSVHTDLVLSFFQKE 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01388 851 Pfam DENN (AEX-3) domain 617 723 IPR001194 -
Cca08g01388 851 Gene3D - 148 355 - -
Cca08g01388 851 Pfam uDENN domain 210 287 IPR005113 -
Cca08g01388 851 MobiDBLite consensus disorder prediction 395 409 - -
Cca08g01388 851 Gene3D - 621 787 IPR043153 -
Cca08g01388 851 ProSiteProfiles Tripartite DENN domain profile. 192 851 IPR037516 -
Cca08g01388 851 PANTHER SUPPRESSION OF TUMORIGENICITY 5 ST5 48 851 - -
Cca08g01388 851 MobiDBLite consensus disorder prediction 496 526 - -
Cca08g01388 851 SMART uDENN_cls 156 289 IPR005113 -
Cca08g01388 851 PANTHER DENN (AEX-3) DOMAIN PROTEIN 48 851 - -
Cca08g01388 851 MobiDBLite consensus disorder prediction 390 415 - -
Cca08g01388 851 SMART DENN_cls 318 725 IPR001194 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01388 Cca-Chr8 41586551 41600125 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01388 - - gmx:100782148 1440.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01388 08 41586551 41600125 Cca08g01388 08 41586551 41600125 ECH
Cca11g02531 11 52449696 52463553 Cca08g01388 08 41586551 41600125 PCT