Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02518 ATGAGTTTCATCTTCGGAAATAAGAAAACGCCCGCAGAACTTTTGCGGGAAAATAAGAGAATGCTGGACAAATCAATTAGAGAAATAGACCGAGAGAGACAAGGTTTGCAGTCACAGGAGAAGAAACTGATTTTGGAGATAAAGAAAAGTGCCAAACAAGGCCAGATGGGAGCTGTTAGAGTGATGGCAAAAGATCTTGTTAGAACAAAGCATCAGATTGAAAAGTTTTATAAGCTCAAATCACAGCTCCAGGGTGTATCCCTCAGAATTCAAACTTTGAAATCAACACAAGCAATGGGTGAGGCAATGAAAGGTGTGACTAAGGCAATGGGACAGATGAATAGGCAGATCAACTTGCCATCTTTGCATAAAATCTTGCAAGAATTTGAGAGACAGAATGAGAGGATGGAATTGATTTCAGAGGTGATGGGAGATGCAATAGATGATGCTTTGgaaggggatgaggaagaagaagaaacagaagaaTTAGTGAATCAGGTTCTTGATGAGATTGGAATTGACATAAATCAAGAGCTTTTGAATGCACCATCAACGGCTGTTGCTGCCCCAGCTGCAAAGACTAAGGTGCCTCAAGTTGAAACTAGTGGGAATGATGATGCCGGGATAGATAGTGATTTACAGGCAAGGTTAGACAATTTACGAAAAATGTAA 672 0.3839 MSFIFGNKKTPAELLRENKRMLDKSIREIDRERQGLQSQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTKHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQINLPSLHKILQEFERQNERMELISEVMGDAIDDALEGDEEEEETEELVNQVLDEIGIDINQELLNAPSTAVAAPAAKTKVPQVETSGNDDAGIDSDLQARLDNLRKM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02518 223 Coils Coil 12 46 - -
Cca11g02518 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
Cca11g02518 223 MobiDBLite consensus disorder prediction 190 212 - -
Cca11g02518 223 Pfam Snf7 17 186 IPR005024 GO:0007034
Cca11g02518 223 Gene3D - 6 180 - -
Cca11g02518 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02518 Cca-Chr11 52323892 52327386 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02518 K12191 - gmx:100526885 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02518 11 52323892 52327386 Cca11g02518 11 52323892 52327386 ECH
Cca11g02518 11 52323892 52327386 Cca08g01408 08 42080072 42085560 PCT