Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01408 ATGAGTTTCATCTTCGGAAAGAGGAAAACGCCCGCAGAGCTTCTGCGGGAAAATAAGAGGATGCTGGACAAATCAATTAGAGAAATTGAGCGTGAGCGGCAGGGTTTGCAAGCACAGGAGAAGAAATTGATTTTGGAGATAAAGAAGAGTGCCAAACAGGGCCAGATGGGAGCTGTTAGAGTTATGGCAAAAGATCTGGTTAGAACAAGGCATCAGGTTGAGAAGTTTTATAAGCTAAAGTCTCAGCTCCAAGGTGTATCACTCAGAATTCAGACTCTGAAATCGACACAAGCAATGGGCGAGGCTATGAAAGGCGTGACAAAGGCCATGGGGCAAATGAATAGGCAGATGAACTTGCCATCTTTGCAGAAAATCATGCAAGAATTTGAGAGACAGAATGAGAAGATGGAATTGACATCCGAGATGATGGGAGATGCAATAGATGATGCTTTGgaaggagaagaagatgaagaagaaactgaagaTCTAGTGAACCAAGTTCTTGATGAGATTGGTATTGACGTTAACCAAGAGCTTGTAAATGCACCATCATCAGCTGTTGCTGCCCCAGCTGCAAAGACAAAGGTACCTCAGGTTGAAACTACTGGGAATGATGATGGAGGTATAGATAGTGATTTACAGGCAAGGTTAGACAATTTAAGAAAAATGTAG 672 0.4092 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQAQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQVEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTSEMMGDAIDDALEGEEDEEETEDLVNQVLDEIGIDVNQELVNAPSSAVAAPAAKTKVPQVETTGNDDGGIDSDLQARLDNLRKM 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01408 223 Gene3D - 6 181 - -
Cca08g01408 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
Cca08g01408 223 Pfam Snf7 17 186 IPR005024 GO:0007034
Cca08g01408 223 MobiDBLite consensus disorder prediction 183 223 - -
Cca08g01408 223 Coils Coil 12 46 - -
Cca08g01408 223 Coils Coil 119 139 - -
Cca08g01408 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01408 Cca-Chr8 42080072 42085560 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01408 K12191 - gmx:100526885 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01408 08 42080072 42085560 Cca08g01408 08 42080072 42085560 ECH
Cca11g02518 11 52323892 52327386 Cca08g01408 08 42080072 42085560 PCT