Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02510 ATGTCGAGAGTTGAAGGTGGTAAAAAGAGTGGTGAAAAGGAGAACGAGTTGTTATCAAAAGATGTTGAAACCATAAACGAAGCTCCGTGCAGGGAGAAAAAGTCTTCCACGAATTCAACATCTTCCAAAACCGCGTTACATGATCCCAAATCAAAGGCTAAAGCTAACAAAGAAGACAATTTGCGTAAGGATAAGAAGTCTATATGGGGTTGGAAGCCATTGAAGGCCCTTTCCCTGACTCGCAACAAGAGGTTTAATTGTTGTTTTACTCTCCAAGTCCATTTGATTGAAGGTTTGCCATTGAGTTTCAACAATTATAGCCTTTGTGTGTTTTGGAAGAGGAAGGATGTGCTTTTGGCGACCCCTCCAGCCAAGGTGATTCAAGGTGTGGCTGAGTTTCAACAGATTTTGGCTCATACTTTCTCAATCTGTGGAAGTAAGAGTGGACCCCATAATTCTGCTAAATATGAAGCTAAGTATTTTTTGGTCTATGCTTCTACGCCTGGTGCCCCAAAACTTGATTTGGGGAAGCACCGGGTGGATCTCACAAGGTTGCTTCCTCTCACACTGGAAGAGCTTGAAGAAGAGAAAACCTCAGGGAAATGGACTACAACTTTTAGATTATCAGGAACTGCAAAGGGTGCAGTAATGAATGTCAGTTTTGGATATGCGATTGTTCCGGATAATACTAGTACTCCTCCTAATTTATTCACTTCCAGGGTAAATAGCATGCCTTTGATGGACCCTGATACAAAACCTAGTCAGGTTGAGAGGAACGTTAGACGTGCCGGTAGTTTGCCATGCTTTACCAGTCCTCATTATTCATCTCAAGATGTGGTAGATGTGGTGAAAGATCTTCATGAGGTGTTACCATCATCAGAATCAGCACGAGTCAGCTTATACAAGAATTTTGATGAAGAAAAGAGGTGTAATCTTCTGCATGACAAACCTGAACCTGAATTATATAAAGAAAATCCCAAGCCAATCAAACCGGCTGTCCGTTTTTCATCTGATAGTGAAAAAGGAAAGTCAGAAGAGACTCCTGGTAATGAAGGGAAAACATGCAGTCTGGTGCATCACAAACCTGAATTTGATGGGTTTAGAGAAAACCTGCAGATAGTTGGGACAAATGATTATCCTTTACCTGATTCAGGAATAGAAAGTTCCAAAGAGTGTGAAGGTAATGGATTTTCTATTGTTGATCAGGGGCAGGGCACCAATTTTTCATCAAATGAACATGTTAAACTAGAGGAATCCATCATAAAAGCTGTTGTTGATGTCCATACAGTTGACAGATTTGATACTGACGTTATTCAAGTATCTTTTGAAGATAGTGCTAAACATGATTCCTTGGATGAGCTAAATGATAGTTCTAGGGAAAGTGCTGCGGTACCTGAAATTTCTAACAGAATGGGTGTCTTGTGCACGAAAGAAATAATGCAAGAACTAGAATCAGCTTTAAATAGAGTCTCAGAGTTGGAGAGCTTGGCAGTGGATTCTCCTATCACCGTGGAAGCCAAATATGAGAATAGGTTGAGAAAGTCACAGAGCTTGGATGATTTTGCAGAATCAGTCGCGAGTGAATTTTTAAGTAAGCTAGGAATAGACCATAGTCCAATGGGTGTGAGTTTTGAAAGCGAGTTCGAGTCTCCAAGAGAGCGCCTTTTAAGACAATTTGAAAAGGAAGTTCTTTCTGAGGGCTTCTCGTTGTTTAATTTTGACACAGGCAATGATAATGAAGCAGATGGAGGCTATGGCGCTTCTTTTGGATCTGAGCAGTGGAAGTTCTCTGCAGGTATTAAGTCAGTATCCTCATTGCCAGATCTGCAGAAAGAGTATCTAATTGAGTCTGAGGATGTGAGGAGCAAACAGAAGGTCCAGATGCTAGTAGACTTGGAAACAGAAGCCTTAATGCATGAGTGGCGTTTGAATGAGAAAGCTTTTCAGCATTCTCCTCCAAAAGATTTTAATGGTTTTGGAAGTCCAATATATTTTCTACCCGAAGAACCTCTACCATTACCTCCTCTGGAAGAGGGGATGGGTCCTTTTCTTCAGACCAAAGATGGGGGGTTTCTACGATCACTGAATCCCTCACTTTTCAGGAATAGTAAAACTGGTGGGAGATTAATCATGCAGGTTTCCAACCCTGTGGTGATGCCTGCTGAAATGGGTTCTAGGATAATGGAGATTTTGCAGTGTTTGGCTTCAGTTGGAATTGAAAAGCTTTCCATGCAAGCAAACAAGTTAATGCCTCTGGAAGAAATCACAGGGAAGACAATGCAACAAATATCATGGGAAGCAAAGTCAGCCTTGGAGGGAACACACAGGCAATTCCATTTGCAGCATGATTTGGTAACAGAACAAGAATCTACTTGTGCGCAAAAGGGCTTGAAAGGAATATTACCTGGTGGACTAAAGACTGACAAGTTTTGTTCAAGTTCAGTTGACGACCAGAAAGGCTCAGAGTTTGCTTCATTGGAAGATCTTTCTCCATTAGCTATGGATAAAATTGAAGCACTTTCAGTGGAGGGTTTGAGAATTCAATCCGGGATGTCAAAAGAGGATGCACCATCAAACATCATTGCACAAACCTTTGGGGACATATCAGCTCTACAAGGCAAGGGGGTCAGTATTAATGGCTCCCTTGGCCTGGATGGAGCTGCTGCATTGCACTTGTTGAATTTAAAAGACAGCAGCAATGATGGTGTTGATGGGATAATGGGCCTATCATTAACTCTTGATGAATGGATGAGGCTGGATTCTGGTGACTTTGATGATATAGATAACATCAGTGAACATACTTCCAAACTTCTTGCTGCCCATCATGCTAACTCGTTTGACTTCAATCGTGGGAGCCCAAAGGGAGAGAAGAAACGAGGCAAAGGCTCTGGCAGGAAATGTGGTTTGTTGGGAAACAATTTCACAGTAGCTCTAATGGTGCAACTTCGTGATCCTCTAAGAAACTATGAGGCTGTTGGAACACCGATGCTTGCTCTTATACAAGTGGAAAGGGAGTTTGTCCCACCAAAGCATAAGATTTATAGACGTGTGTCTGAGGTGGGGAACATTAATGATGAGGATGATGAGTGTGAAATAGTAGCCAAGGTGGAGATGAAGGTCAACAAAGAAGATAAAAGTTCTGAAGAGGAGGCCATTCCTCAGTTCAGAATTACAGAAGTACATGTTGCAGGTCTAAAGACCGAGCCTGAGGCTGAGGCTCGCAAAAAGAAGGTTTGGGGCACCTCAAGACAACAACAGTCTGGTTCCCGTTGGTTGATTGCTAATGGAATGGGGAAGAACAGTAATAATTTATTTATGAAGTCAAAGCCTGTATCTAAAACTAGTGCTCCAACCACCAAAGACGTGCAACACAGTGACACATTGTGGAGCATCTCATCTCGTATTTTTGGTACTGGAACAAGATGGAAGGAATTGGCAGAACTAAATCCACATGTAAGAAATCCCAATATCATTATACCGAATAAAACTACAAGAGTAAGTTGA 3504 0.4178 MSRVEGGKKSGEKENELLSKDVETINEAPCREKKSSTNSTSSKTALHDPKSKAKANKEDNLRKDKKSIWGWKPLKALSLTRNKRFNCCFTLQVHLIEGLPLSFNNYSLCVFWKRKDVLLATPPAKVIQGVAEFQQILAHTFSICGSKSGPHNSAKYEAKYFLVYASTPGAPKLDLGKHRVDLTRLLPLTLEELEEEKTSGKWTTTFRLSGTAKGAVMNVSFGYAIVPDNTSTPPNLFTSRVNSMPLMDPDTKPSQVERNVRRAGSLPCFTSPHYSSQDVVDVVKDLHEVLPSSESARVSLYKNFDEEKRCNLLHDKPEPELYKENPKPIKPAVRFSSDSEKGKSEETPGNEGKTCSLVHHKPEFDGFRENLQIVGTNDYPLPDSGIESSKECEGNGFSIVDQGQGTNFSSNEHVKLEESIIKAVVDVHTVDRFDTDVIQVSFEDSAKHDSLDELNDSSRESAAVPEISNRMGVLCTKEIMQELESALNRVSELESLAVDSPITVEAKYENRLRKSQSLDDFAESVASEFLSKLGIDHSPMGVSFESEFESPRERLLRQFEKEVLSEGFSLFNFDTGNDNEADGGYGASFGSEQWKFSAGIKSVSSLPDLQKEYLIESEDVRSKQKVQMLVDLETEALMHEWRLNEKAFQHSPPKDFNGFGSPIYFLPEEPLPLPPLEEGMGPFLQTKDGGFLRSLNPSLFRNSKTGGRLIMQVSNPVVMPAEMGSRIMEILQCLASVGIEKLSMQANKLMPLEEITGKTMQQISWEAKSALEGTHRQFHLQHDLVTEQESTCAQKGLKGILPGGLKTDKFCSSSVDDQKGSEFASLEDLSPLAMDKIEALSVEGLRIQSGMSKEDAPSNIIAQTFGDISALQGKGVSINGSLGLDGAAALHLLNLKDSSNDGVDGIMGLSLTLDEWMRLDSGDFDDIDNISEHTSKLLAAHHANSFDFNRGSPKGEKKRGKGSGRKCGLLGNNFTVALMVQLRDPLRNYEAVGTPMLALIQVEREFVPPKHKIYRRVSEVGNINDEDDECEIVAKVEMKVNKEDKSSEEEAIPQFRITEVHVAGLKTEPEAEARKKKVWGTSRQQQSGSRWLIANGMGKNSNNLFMKSKPVSKTSAPTTKDVQHSDTLWSISSRIFGTGTRWKELAELNPHVRNPNIIIPNKTTRVS 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02510 1167 MobiDBLite consensus disorder prediction 318 354 - -
Cca11g02510 1167 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 82 227 IPR019448 -
Cca11g02510 1167 MobiDBLite consensus disorder prediction 1 30 - -
Cca11g02510 1167 MobiDBLite consensus disorder prediction 334 348 - -
Cca11g02510 1167 Gene3D LysM domain 1109 1167 IPR036779 -
Cca11g02510 1167 Coils Coil 476 496 - -
Cca11g02510 1167 MobiDBLite consensus disorder prediction 1 60 - -
Cca11g02510 1167 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1165 - -
Cca11g02510 1167 ProSiteProfiles C2 NT-type domain profile. 77 225 IPR019448 -
Cca11g02510 1167 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1165 IPR039614 -
Cca11g02510 1167 MobiDBLite consensus disorder prediction 31 46 - -
Cca11g02510 1167 MobiDBLite consensus disorder prediction 1100 1119 - -
Cca11g02510 1167 Pfam LysM domain 1122 1159 IPR018392 -
Cca11g02510 1167 CDD LysM 1122 1157 IPR018392 -
Cca11g02510 1167 ProSiteProfiles LysM domain profile. 1118 1166 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02510 Cca-Chr11 52262938 52267116 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02510 - - lja:Lj4g3v2179220.1 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02510 11 52262938 52267116 Cca11g02510 11 52262938 52267116 ECH
Cca11g02510 11 52262938 52267116 Cca08g01412 08 42198454 42203066 PCT