LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca08g01412	ATGATGTTGTCGAGAATGGAGGCTGGGAAGAAGAGTGGTGGGGGTTCTGGTAACCCGAAGAAGTTGTTGAAGGATGTTGAAACCATAAATAAAGCTTTGTACTTGGATAGAAGCTCTTCAAAGAGTTCACTATCTAGTGCAAATTCTCGATCTAAATTCACAGGGAAACCCCAGTTACCTGATCCCAAATCAAAGTCTAAAGCCATTGGTGATAATAATGATGAGGGTGTTCTCAAGGATAAGAAATCCATATGGAATTGGAGGCCACTAAGGGCCCTTTCTCACATCCGAAATAAGAGGTTCAATTGTAGTTTTTATCTTCAAGTTCATTTGATTGAAGGGTTGCCTTCCACTTTTGATGATGCTAGCCTTGCTGTGTACTGGAAGAGGCGTGATGGTGTTCTTGTGACTGGTCCGGCCAAGGTGATTCAATCTGTGGCTGAATTTGAGGAGAAGTTGACCTACACTTGCTCGGTGTATGGCAGTAGGAGTGGACCTCACCATTCTGCCAAGTATGAAGCAAAGCATTTTTTGCTCTATGCTTCTCATCTCGGTGTGCCGGAGCTTGATTTGGGGAAGCACAGGGTGGATCTCACGAGGCTGCTTCCTCTCACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCGGGGAAGTGGACCACTAGTTTTCGATTAACGGGGGCGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGGTATGTGGTGGTTGGAGATAATGCTAGTGCTACCAGAGATAGCTATAGTTCTCCTAAAGCAATGGCCTCCAGGCAGAACAGTTTTTCTGTGGCGAAGCCAGATGTTAAACCAAGACAGTATGATGGAAGCAGCAGGGTGAGACGTGCCGCAAGTTTGCAGTTCTCACCTCAAGCAGCAGATGAGGTAAAGGATCTTCATGAGGTATTGCCATTATCTAAGACGGCACTAGCCAGTTCAATAGACATCTTATATAAGAAATTTGATGAAGAAAAGACGAGTGATCCTCTGCATGAGGAAGCAGAACTTGATTCCTTCACAGAAAATCTTGGGCCCATCAAACCAGATGCCTTTGCTTCTGATCTTGGAAAAGAAAAGCCTGAAGAGCATGTGAATAAGGAGGAAAATCTTGGGCCCATCAAACCAGATGGCTTTGCTTCTGACCTTCGAAAAGAAAAGCCTAAAGAGCATACGGATAAGGATGAAAATACATGTCCAGTGCATGTCGAACCTGAACACTCTGTATTTCAAGAAAAGCTGGAGACGGTTAAATCAGATGACAATCCTTTACTGGATTCTGGAAATGAAAACTATGAACAGTGTCAAGGTAACGAATTTTTTGTTGTCGATAAGGGCATAGAACTGTCATCAAATGAACCTGTTAAAGTAGAGGAATCTGTCATAAAGGCTCCTGAGGATGCTTCTACTGCTGATACTTCCTGTACCGGTGGTATATTGGGTTCTGAGGATAGTATTCAACATGATTTTCTGGATGAGGCAAATGATAGTTCTAAGGATCAGGCAGCGGTAGAGGAATTTGCTAGCAAAGAGAATGGTTTAGACACTAATGAGCTGCTGCTCCTGCAAGAGCTAGAATCTGCTTTAAATTGTGTTTCGAATTTGGAGAGAGTAGCACTAGATTCTCCTAAACCTACAGAAGCGAAATCTGAACATAAGATGACGAGGTCACATAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCATGTTAGACTTAGACCGTAGTCCGATGGGCTTGAGTTCTGAAAGCGAGCCTGAGTCACCAAGAGAGCTACTTTTGAGACAATTTGAGAAGGAGGCTCTGGATGGGGGCTTCTCTTCTTTGTTTGATTTTGACATGAATTATGATAATGAAGCAGATGGTGAGTATGATGCTTCTGCTGCATCTGAGCAGCAGAACTTTTCTGAGGGGGTTAAGTCATCATCCTTCTTGCAAGATCTGCAGGAGGAGCATCGAGTTGAGCCTCCGGATGTGGGGAGCAAACACAGGGCTCAGATGCTAGAAGACTTGGAAACAGAAGCCTTGATGCGGGAATGGGGTTTTAATGAGCGGGCTTTTCATCATTCTCCACCAAAAGATTGTGCTGGTTTTGGAAGTCCAATTCATTTACCGCCTGAAGAGCCTCCCATATTGCCTCCTCTTGATGAGGGGTTGGGCCCTTTTCTTCAGACAAAAGACGGGGGGTTTGTACGGTCTATGAATCCATCGCTCTTCAAGAATTCTAAAAGTGGTGGAAGCTTAATCATGCAGGTATCCAACCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGGATAATGGAGGTTTTGCAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTCTCAATGCAGGCAAAAGAGTTAATGCCGCTGGAAGATATCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTGCCATAGAAGGAGCAGAGAGGCAATGCCATTCGCAGCATCATCCAATAACAGGCCAAGGCAGTGCATGTGTGCAAAGGGACTTGAAAGGAATGCCATCTGGATTAAAGTCTGGTAAGTTAAGTTCAAAGTCAGTGGCCAACCAAACAGGCTCAGAATTTGTTTCATTAGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGGATGTCAGAAGAGGAAGCACCGTCAAACATCGTTGCTCAGTCCATTGGGAATATTTCAGCTCTTCAGGGCAAGGGGGTTGATGTTAGTGGTTCCCTTGGCCTGGATGGAGCTGCTGGTTTGCAGTTGATGGATGTAAAAGACGGCAGTGATAGCGTTGACAGTGTTGATGGGATAATGAGCCTATCATTAACCCTTGATGAATGGATGAGGCTGGATTCAGGTGAGATTGATGATATGGATAACATCAGTGAGCATACTTCCAAAGTTCTTGCAGCCCATCACGCAAACTCTTTTGACTTCATTCGTGGGAGTTCGAAGGGAGAGAAGCGACGAGGCAGAGGCAGAAAATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTGCGCGATCCTCTGAGAAATTATGAGCCGGTTGGAACGCCAATGCTTGCTCTCATACAAGTTGAGAGAGAGTTCATGCTCCCTAAGCAGAAAATTTTCAACAGCGTGTCTGAGATAAGGAAAAACAACGATGACGATGATGAGAATGAGATAGTAGCGAAGGTGGAGACAAAGGACACCAAGAAAGAGGAGAAAGGTTCTGAAGAGAAAGAGGAAGAGGGCATTCCCCAGTTCAGAATTACTGAAGTCCACGTGGCAGGCATGAAGCCTGAGCCTCAGAAAAAGAAGCTTTGGGGCACCTCAAGCCAGCAACAGTCTGGTTCTCGCTGGTTGCTTGCTAATGGAATGGGGAAGAGCAATAATAAGCTTTCACTAATGAAATCAAAGGCTGTATCAAAATCTAATGCTCCGGTTACCACTAAGGTGCAACCTGGTGACACCTTGTGGAGCATATCATCTCGAATTTATGGCACTAGAGGAAAATGGAAGGAGTTAGCAGCACTAAATCCACATATAAGAAACCCCAATGTCATTATACCAAATGACACTATAAGACTTAGCTGA	3642	0.4459	MMLSRMEAGKKSGGGSGNPKKLLKDVETINKALYLDRSSSKSSLSSANSRSKFTGKPQLPDPKSKSKAIGDNNDEGVLKDKKSIWNWRPLRALSHIRNKRFNCSFYLQVHLIEGLPSTFDDASLAVYWKRRDGVLVTGPAKVIQSVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASHLGVPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLTGAAKGAVMNVSFGYVVVGDNASATRDSYSSPKAMASRQNSFSVAKPDVKPRQYDGSSRVRRAASLQFSPQAADEVKDLHEVLPLSKTALASSIDILYKKFDEEKTSDPLHEEAELDSFTENLGPIKPDAFASDLGKEKPEEHVNKEENLGPIKPDGFASDLRKEKPKEHTDKDENTCPVHVEPEHSVFQEKLETVKSDDNPLLDSGNENYEQCQGNEFFVVDKGIELSSNEPVKVEESVIKAPEDASTADTSCTGGILGSEDSIQHDFLDEANDSSKDQAAVEEFASKENGLDTNELLLLQELESALNCVSNLERVALDSPKPTEAKSEHKMTRSHSLDDVTESVASEFLSMLDLDRSPMGLSSESEPESPRELLLRQFEKEALDGGFSSLFDFDMNYDNEADGEYDASAASEQQNFSEGVKSSSFLQDLQEEHRVEPPDVGSKHRAQMLEDLETEALMREWGFNERAFHHSPPKDCAGFGSPIHLPPEEPPILPPLDEGLGPFLQTKDGGFVRSMNPSLFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPAIEGAERQCHSQHHPITGQGSACVQRDLKGMPSGLKSGKLSSKSVANQTGSEFVSLEDLAPLAMDKIEALSMEGLRIQSGMSEEEAPSNIVAQSIGNISALQGKGVDVSGSLGLDGAAGLQLMDVKDGSDSVDSVDGIMSLSLTLDEWMRLDSGEIDDMDNISEHTSKVLAAHHANSFDFIRGSSKGEKRRGRGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFMLPKQKIFNSVSEIRKNNDDDDENEIVAKVETKDTKKEEKGSEEKEEEGIPQFRITEVHVAGMKPEPQKKKLWGTSSQQQSGSRWLLANGMGKSNNKLSLMKSKAVSKSNAPVTTKVQPGDTLWSISSRIYGTRGKWKELAALNPHIRNPNVIIPNDTIRLS	1213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca08g01412	1213	Pfam	N-terminal C2 in EEIG1 and EHBP1 proteins	98	240	IPR019448	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	382	403	-	-
	Cca08g01412	1213	Pfam	LysM domain	1167	1212	IPR018392	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	356	374	-	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	545	563	-	-
	Cca08g01412	1213	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	2	1212	IPR039614	-
	Cca08g01412	1213	SMART	LysM_2	1165	1213	IPR018392	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	37	74	-	-
	Cca08g01412	1213	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	2	1212	-	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	37	55	-	-
	Cca08g01412	1213	Gene3D	LysM domain	1154	1213	IPR036779	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	346	403	-	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	545	564	-	-
	Cca08g01412	1213	CDD	LysM	1167	1212	IPR018392	-
	Cca08g01412	1213	SUPERFAMILY	LysM domain	1164	1212	IPR036779	-
	Cca08g01412	1213	MobiDBLite	consensus disorder prediction	1	22	-	-
	Cca08g01412	1213	ProSiteProfiles	C2 NT-type domain profile.	93	241	IPR019448	-
	Cca08g01412	1213	ProSiteProfiles	LysM domain profile.	1164	1212	IPR018392	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca08g01412	Cca-Chr8	42198454	42203066	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca08g01412	-		-	gmx:100815106	1723.37

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca08g01412	08	42198454	42203066	Cca08g01412	08	42198454	42203066	ECH
	Cca11g02510	11	52262938	52267116	Cca08g01412	08	42198454	42203066	PCT