Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02500 ATGGCAACATCTAGCAAGTTTGATCCTTCTTCCAATAGCCCAGATAGACCATTGTACCCTGGGCAACGTGGATCCCACATAGCTGCTTCATTAGATAGATCAGGTAGCTTTCGGGAAAGCATGGAAAATCCAATTCTGTCTTCTCTTCCTAACATGTTAAGAAGCAGTTCTCCAGCAATGCATGGGGATGTGGAGAGCTTCTTCAATTATGTGCGTTTTGATCCGAAGTTGTTAACACTAGAGCATAAGTCTAATCGTCAAATGGATTATAAGCGACTTGTTAATGCTGCTCTTGGAATTTCACCTGATGAATCTCCATCTAGTTCTTCAAAAGGCAAGCTACTGTCGTCTCCAGTACCAGAAGACCTGAAACGACTCAAGGAAGTTTTGGGTGGAAATGTTGTGAAGGCAAGGGAACGTGTGAAAATGTTTAGTGAGGCTTTATCTGTATTCCATGAAGTTTTCCCAGCTATAACATCAAAGAAAAGATCTCGAGCTGAAGGTTTTTCTAATGAGCGTTCTAATGCCATGTTAAGTGATCGGCCAGTCTTGGGGCCGAGCATAGGTAAGGTTGGAGTTCAAGGTCATCCTGCCACCGGTGGTTTTGAACTTGAGCAGCAAAAGTCAGAAGAACGTACCAAAAATGTTGTTCCAAACAAGCGCACTCGAACTTCTATGGTTGATGTAAGGGTGGATGTGCGGACTAATTCTCTTGCCAGGCCATTAGGGAGTGTTGACAGAGATAAGGAAAAGCTACGGATTGCCAACAACGGTGTAGTTCAGAGTGAAGAGCGAACCTTACCTATTGGAGGTGATGGTTGGGAAAAGTCAAAAATGAAGAAAAAGCGTTCCTGCATCAAACTTGATGGTTCTCCAAGTACAACATTGACTAAACCTGTTAACACCTTCCAAGAAACTAAACAGGGAGTGCAACAAAGACTTGCTACTGATTCGCGGTCAAAATTGAGTAATGATTCTCATTCTTTCAGGCCAGGAGTTTCTAATGGAACTGTTGGAACTGGAAAATCAGATGGTATCTCTCAACAAACTGGCTTGGGCATACGTGCCTCTACCCCTAGAAACAACCAAGATAATAATTCCCTTGTCAATGATAGGCGTGGCCGTCCTGTTAGTTCAGACAAGGAAAGGGTGAATTTCAGAGCTGTAAACAAGGCTACTGCACGTGATGAATTTAATTCAGCTAGTCCTACCTCAAGTGCAAAAATGAACACTGCTATTCGAGCACCACGGTCAAGTTCAGGAGTTGCCCCCAAGTTGTCACCAGTTGTCCATAGAGCAACTGTTCATAATGATTGGGAACTGTCTCATTGTTCCACAAAGCCCCCTGCTGCTGGTACTAACAGTCGTAAACGTGTGGCATCAGCACGGGAACCTGTTGTCCCCTGGCAGAGACCGCAAAAAAGTTCTCGCACTGCTAGAAGAACAAATTTCATGCCCATTGTTCCAAATAATGATGAAATTCCAGCTTTGGATACTGCATCTGATGTGACTGGTAATGATCTCGGGTTAGGATTTGCCAGGCGCTTGGCTGGCAGTTCTCCTCAGCAAATTAGACTAAAAGGTGATCCTTCATCTTCAGCTGCCTTATCTGAAAGTGAAGAGTCAGGGGCGGCTGAGGTTAAACCAAAAGAAAAGGGTCGGAAACAGGAAGAGATAGATCTGAAAGCTGGACAAAATGTTCAAAAGGTGTCTAATGTGGTATTGCCAACTAGAAAGAATAAGCTTGTTTCTGGGGAAGAACATGGAGATGGTGTTCGGAGGCAAGGGAGGACAGGACGTGGTCATTCTGCCACAAGGTCACTGATGCCAATGACATCTGAGAAGCTTGGGAATATAGGAACTGCAAAACAACTTAGAAGTGCCAGGCAAGGATCTGATAAGAATGAAAGCAAGGCAGGTCGTCCACCATCTAGGAAACTTTCTGATCGTAAGGCCTATGCACGTCAAAAGCCTGCTATTAATGCAGCAGCAGATTTTTTTGTTGGGTCAGAAGATGGACATGAAGAGCTGCTGGCTGCTGTAAAGGGTGTTATCAACTCTGCTCATGCCTTTTCCAGCCCCTTCTGGAGGATGATGGTGCCTTTCTTCAGTTTGATAACTGAGGAGGATATTACTTACTGGAAGCAAAAGGTAAATCTTGAATCTAGCACACTGACGCCAACTCCCATTCCTTCAAATATTGATGGTTGTGAAACCATTGTTAATGGATATGGGTTGATGGACCATGAAAGAGATGCTGGATCTGATGCTCAATGGAATGCCGGAAGTATTTCAGAACAGCTACAACTATCTAAGGGAGATCATAATGTTATTCCTCTCTGTCAAAGGCTTATAGCTGCTTTGATCTCAGAGGAGGAGTGTAGTGGTGGAAGTGAACACTTCAAGTTAGAtgcatatgatactgaatttgaacctgatggggaatctgaattgaGTGGTTTGGATCACCACTCAGGAACAAATTTTCAGTTTGCTTGTCATTCTTCTTATAATGGCTATAGGGTTATGGACAAGCTGAGACATGATGAAACTGAAAGTGATGTAGTTGGTTTCCCTCCAACTGGATTGAATTCAAGCTTTGGTAACTCTGTAAACGGTTTTCTTCACGATAAAGCATTAATGTCTAGCTTCACCTGTTCAGAGTTACAATATGATAGCTTGGACATAAATGATAAGCTTCTCTTGGAGCTTAAAAGTATTGGAATTACCCCATCACCAGTGCCTGATATGTTGCAAACAGATGATGAAGGAATATTAGAGGATATTACTAGGTTGGAGGAGCTTTACCAAGGACAGATATCCAAGAAGAAAAGCTTGCTAGATGGAATATTCAAATCTGCCTTAGTGGATAAAGAACTTCAAGAAAAGGATTTTGAGCAACGTGCTTTAGATAAACTCGTTGTGATGGCTTATGAGAAATACATGGCTTGTTGGGGTCCCAGTCCCTCTGGTGGGAAAAATACAAGCAACAAAATGGCCAAGCAAGCTGCATTGGGATTTGTCAAACGGACGTTGGAGCGATGTCGTCAATATGAAGATACTGGCAAGAGCTGCTTCAATGATCCTTCATTCAAGGATATGTTCCTTTCTGAATCCTCAAAACTATATGCTTCTTCCCTTTCTCTGGAAGCAAGAACAGCTTCCATGGGTTCACAACAGAGTCCATCACAGTTTAGTCAGAATATGGATAATCATGATCTAAATTCATCAGATATGCTTCCTGCTTTAAATCATTCATCTGAACAAACTAGTGGGAAGGAAGATCTCTGGTCAAATAGGGTGAAGAAGAGGGAATTGTCCCTTGATGATGTTGGTGGTACACCAGGTATTTCTGGTGTTCCAGGCATCGGAAGTTCTGTATCAAACAGTGCAAAAGGAAAGAGAAGTGAGAGAGACAGGGATGGAAAGGGGCACAGCAGGGAGGTTCTATCCAGAAATGGAACTACTAAAGTTGGTAGACCAACATCATCCAGTGCTAAGGGAGATAGAAAATCCAAAACAAAGCCTAAGCAGAAAGCAACTCAGCATTCTGTTTCTGTGAATGGTCTCCTTGGGAAGTTATCAGAGCAACCAAAACCAGCATTACCTTCTGTTCAAAAGCCAAATGAAATGCCTACAAATAGCAATGCAAAGGAGAAGGACGAGTTTGGCTTGGGTGGATTGGACGAGCCTATTGATTTGTCCAACCTGCAGTTACCTGGAATGGATGTACTCGGTGTTGGTGATGATCAAGGTGGTGATCTTGGTTCCTGGTTGAATATTGATGACGATGGATTACAAGATCACGATGACTTTATGGGTGTTTCGGATTTTGCTCGTGTTAAAGTTCATGACTTCCACTGTAAAGATCTTTTTGTTCAAGATACACACCTCAATGTGATGTACAGCGAGTGTTTTGCTGCAGTAGCTTCATCCAGATAA 3942 0.4244 MATSSKFDPSSNSPDRPLYPGQRGSHIAASLDRSGSFRESMENPILSSLPNMLRSSSPAMHGDVESFFNYVRFDPKLLTLEHKSNRQMDYKRLVNAALGISPDESPSSSSKGKLLSSPVPEDLKRLKEVLGGNVVKARERVKMFSEALSVFHEVFPAITSKKRSRAEGFSNERSNAMLSDRPVLGPSIGKVGVQGHPATGGFELEQQKSEERTKNVVPNKRTRTSMVDVRVDVRTNSLARPLGSVDRDKEKLRIANNGVVQSEERTLPIGGDGWEKSKMKKKRSCIKLDGSPSTTLTKPVNTFQETKQGVQQRLATDSRSKLSNDSHSFRPGVSNGTVGTGKSDGISQQTGLGIRASTPRNNQDNNSLVNDRRGRPVSSDKERVNFRAVNKATARDEFNSASPTSSAKMNTAIRAPRSSSGVAPKLSPVVHRATVHNDWELSHCSTKPPAAGTNSRKRVASAREPVVPWQRPQKSSRTARRTNFMPIVPNNDEIPALDTASDVTGNDLGLGFARRLAGSSPQQIRLKGDPSSSAALSESEESGAAEVKPKEKGRKQEEIDLKAGQNVQKVSNVVLPTRKNKLVSGEEHGDGVRRQGRTGRGHSATRSLMPMTSEKLGNIGTAKQLRSARQGSDKNESKAGRPPSRKLSDRKAYARQKPAINAAADFFVGSEDGHEELLAAVKGVINSAHAFSSPFWRMMVPFFSLITEEDITYWKQKVNLESSTLTPTPIPSNIDGCETIVNGYGLMDHERDAGSDAQWNAGSISEQLQLSKGDHNVIPLCQRLIAALISEEECSGGSEHFKLDAYDTEFEPDGESELSGLDHHSGTNFQFACHSSYNGYRVMDKLRHDETESDVVGFPPTGLNSSFGNSVNGFLHDKALMSSFTCSELQYDSLDINDKLLLELKSIGITPSPVPDMLQTDDEGILEDITRLEELYQGQISKKKSLLDGIFKSALVDKELQEKDFEQRALDKLVVMAYEKYMACWGPSPSGGKNTSNKMAKQAALGFVKRTLERCRQYEDTGKSCFNDPSFKDMFLSESSKLYASSLSLEARTASMGSQQSPSQFSQNMDNHDLNSSDMLPALNHSSEQTSGKEDLWSNRVKKRELSLDDVGGTPGISGVPGIGSSVSNSAKGKRSERDRDGKGHSREVLSRNGTTKVGRPTSSSAKGDRKSKTKPKQKATQHSVSVNGLLGKLSEQPKPALPSVQKPNEMPTNSNAKEKDEFGLGGLDEPIDLSNLQLPGMDVLGVGDDQGGDLGSWLNIDDDGLQDHDDFMGVSDFARVKVHDFHCKDLFVQDTHLNVMYSECFAAVASSR 1313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02500 1313 MobiDBLite consensus disorder prediction 471 485 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 313 373 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 543 562 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 524 539 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 601 628 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 1132 1150 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 629 653 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 1095 1109 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 1 18 - -
Cca11g02500 1313 PANTHER OS05G0107300 PROTEIN 1 1275 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 581 597 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 396 417 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 1 26 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 396 424 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 1053 1223 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 1053 1094 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 442 487 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 313 381 - -
Cca11g02500 1313 MobiDBLite consensus disorder prediction 519 653 - -
Cca11g02500 1313 PANTHER PLANT/F27B13-30 PROTEIN 1 1275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02500 Cca-Chr11 52164799 52174290 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02500 - - gmx:100805358 2214.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02500 11 52164799 52174290 Cca11g02500 11 52164799 52174290 ECH
Cca11g02500 11 52164799 52174290 Cca08g01420 08 42402927 42413974 PCT