Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01420 ATGGAAAATCCAATTCTGTCTTCTCTTCCTAGCATGTCAAGAAGTAGTTCTTCAGCAACACAAGGGGATGTGGTGAGCTTCTTCAATTGTGTGCGTTTTAATCTAAAGTTGGTGGCTCCAGAGCACAAGTCTAATCGTCAAACAGATTATAAACGACTTGTCAGTGCTGCTTTTGGAATTTCATCTGATGAATCTCCATCTAGTTCTGCCAAAGGCAAGCAGCTGCCATCCCCAGTACCAGAAGATATCAAACGACTTAGGGATAGTTTACACGTAAATTTCAGGCGGGCAAGGGATCGAGCTAAAATGTTCAGTGAAGCCTTGTCTAGATTCAACAAAGATTTCCAAAATATAACTTCAAAGAAGAGGTCTCGAGCTGAAACCTTTTCTAATGAACGTTCTAGTTTCACGTTAAGTGATCGATCTGTGTTGGGAACAAGCATAGGTAAGGTTGGAGTTCAAGGTCATGCAGTCACTGGTGGTTTTGAACATGACCAGCCGAAGTTGGAAGAAAGAACAAAAAATGTTCCAAACAAGCGAACTAGAACTTCTTTGGTCGATGTAAGGATGGATGTGCAGAATAATTCTCTTGTCAGGCCATCTGGGACTATAGATAGAGATAAAGAAATTTTACGGATTGCCAATAGTGCTGTGATTCAGGGTGAGGAACGACCTTTACCAATCGGAGGTGATGGGTGGGAAAAGTCAAAAATGAAGAAGAAGCGTTCAGGCATCAAACCAGACGGGTCTCAAAATACAGCATTGACAAAACCTGTTAACCTTTTCCAGGAAAGTAAACACAGAATGCAACATAGAGTAGCCACTGATGGTCGATCAAAATTGAGTAATGATTCTCATTCTTTCAGGTTGGGGGTTTCTAATGGAACTGTTGGAGCTGGAAAATCAGATGGTGTCACTCAACAAACAGGGTTGGGCATACGCGTCTCTACCCCAAGAAGTGACCCAGAAAATAATTCTGCTGTCAATGATAGACGAGATCGTCCTGTTAATTCAGACAAGGAAAGGGTGAATTACAGAGCTGTTAACAAGGCAACTGTTCGCGATGAATTTAATTCAGCAAGCCCTAATTCAAGTGCAAAATTGAATACACCTATTCGGGCGCCACGATCAGGCTCAGGAGTTGCCCCAAAGTTGTCACCAAGTGTCCATAGAGCAGCTGTTCCCAATGATTGGGAGCCATCACATTGTACATCCAAGCCCCCTGCCAATGTCGGTACTAACAACCGTAAGCGTATGACATCAACAGGATCATCTTCCCCATCTGTTGGCCATTGGCAAAGGCCCCAAAAGAGCTCCCGCACTGCCAGAAGAACAAATTTTGTGCCCATTGCATCAAGTAATGATGATTCCCCTGCTTTGGATTCTGCATCTGATGTGACTGGTAATGATCTTGGATCAGGATTTGTCAGACGTTTGGCTGGCAATTCTCCTCAGCAAATTAAATTGAAAGGTGATTCTTCAACTTCAGCTGCCTTATCGGAAAGTGAAGAGTCAGGGGTGGCTGAGATTAAACCAAaagagaagagaaggaaagcagaggagaTAGATCAGAAAGCTGGACAAAATGTTCAGAAGGTTTCTAGCTTGGTCCTTCCAACTAGAAAAAATAAGCTTGTCTCCGGGGAAGAATATGGAGATGGTGTTCGGAGGCAAGGTAGGACAGGACGCAATTTTCCCACTTCAAGGTCGCTGATGCCAATGGCATCTGAGAAGCTTGGAAATATAGGGACTGTAAAGCAACTTAGAAGTTCAAGACTAGGACTTGAGAAGAGTGAAAGCAGGGCAGGTCGTCCACCAACCAGGAAACTTTCCGATCGTAAGGCATATGCACGTCAAAAACATACAGCAATTAGTGCATCAGCAGATTTTCTTGTTGGGTCAGAAGATGGACATGAAGAATTATTGGCTGCTGTAAAGGGTGTTATCAACTCTGCTCGTGCATTTTCCAGCCAATTCTGGAGGCAGGTGGAGCGTTTCTTTTGTTTGATAAGTGAGGAGGATATGGCTTACTGGAAACAAAAGATAGATGTGGAATCAAGTGGATTGACTTCAACTCCAGTTCCTACACATAGAGATGACTGTGAAGCTGTTGCTAATGTTGGGTTAACTGTCTGTGAAAGAGATTTTGAACCTGGTGATCCTAAAGGAGATTCTAATGGAATTCCCCTCTGTCAAAGGCTAATATCTGCTTTAATTTCAGAGGAGTGTAGCAGTGAAGATATCAAGTTTGATTCATGTGATACTGAATCTGAGGCAGATGGAGAGTTGGATTTGTGCAGTCTGGATCACCACTCTCGATTTAATTCTCATCTTGCTTGTCATTCTACTTACAACGGTTATAGGATAACTAGGAAGTCGGGACATGATGAGACTGAAAGTGATGTAGTTGATATCTCATCAACTGGGTTTAATTCAAGCCAGAACATGCCTACCTTGATCTGTTCAGAGTTGCAATATGCCACCTTGGGTATGAATGAAAAGCTTATCTTGGAGCTTCAAAGTATTGGAATTTTCCCAGAATCAGTGCCTGAAATCTTGCAAACAGATGATGAAGGAATTTGTCAGGATATCACTAGGTTAGAGGAGCATTACCAAGGACAGATGTCCAAGAGGAAATGCTTGCTAGATGGATTATTGAAATCTGCTTCAGTGACAAAAGAACATAAAGAAAAGGACTTTGAACAACGTGCTCTTGACAAACTTGTCGTGATGGCTTATGAGAAATACATGGCTTGTTGGGGTCCCGGCTCATCCGGTGGGAAAAATTCAAGCAACAAAATTGCCAAGCAAGCTGCATTGGGACTTGTTAAACGAACATTGGATCGATGCCATCAATTTGAAGATACAGGCAAGAGCTGCTTCAATGAGCCTTTGTATAAGGATATGCTCCTTGCTGCTTCTGCCCAGCTAAGTATTGTTCAGCATTTAGATGGCATGGAGGCTGAGTCCACAAAACCTTATACTTCTTCCTTTTCTCTGGAAGCAAGAACTGGTTCCATGGGTTCACAGCAGAACCCTTCACAATTTAGTCAGAATATAAATAATCATGATCTCTATTCATCAGATATTTCTGCTGCTATAAATGGTTCATCTGAACAAACTAGTGGGAAGGAAGATCTATGGTCAAACAGGGTGAAGAAAAGGGAATTGTCCCTTGATGATGTTGTTGGTACTATTGGTAGTTCAGGTGCTCCATCAGGCACTGGAAGTTCTCTATCAAATAGTACTAAAGGGAAGAGGAGTGAAAGAGATAGAGATGGAAAAGGGCAGAGCAGAGAAGTGCTTCCCAGAAACGGAACTACCAAAGTTGGTAGGCCAGCATTATCTAGTGCTAAGGGAGAAAGGAAACCCAAAACAAAGCCTAAGCAGAAAGCAACTAAGCATTCTGTTTCTGTAAATGGTCTCCTTGGCAAGCTATCAGAGCAACCTAAAACAGCTTTGTCTTCTGTTTCAAAGTCTAATGAAATGTCTGCTAACAGCACTGCCAAGGAGAAAGATGAGTGTGGCATGAGTGAATTTGATGAGCATGAACCTATCGATTTGTCCAACCTCCAACTTCCTGGAATGGATGTGCTTGGTGTTCCCGATGATCTCGATGACCAAGGTTCAGTTCCTCCGCATGATGCTGTTCAAGTTGTTTTACTGGGCTTCATTCAGGTGTTCATGCAGATTTCCCCGCCAAGGCTCAGGGAAAATTTGGTAACGGATGGTTGTGCCAAGGAACTTCAGAAGATTGCAAGGGCATCTTGTAGAAACTTTTCTCAAATGTTCTTGATGATCCAACTTTCTGAGAAATTAATATGCAAAGGAATTTTGTTATCAAAACTGGATTGA 3855 0.4218 MENPILSSLPSMSRSSSSATQGDVVSFFNCVRFNLKLVAPEHKSNRQTDYKRLVSAAFGISSDESPSSSAKGKQLPSPVPEDIKRLRDSLHVNFRRARDRAKMFSEALSRFNKDFQNITSKKRSRAETFSNERSSFTLSDRSVLGTSIGKVGVQGHAVTGGFEHDQPKLEERTKNVPNKRTRTSLVDVRMDVQNNSLVRPSGTIDRDKEILRIANSAVIQGEERPLPIGGDGWEKSKMKKKRSGIKPDGSQNTALTKPVNLFQESKHRMQHRVATDGRSKLSNDSHSFRLGVSNGTVGAGKSDGVTQQTGLGIRVSTPRSDPENNSAVNDRRDRPVNSDKERVNYRAVNKATVRDEFNSASPNSSAKLNTPIRAPRSGSGVAPKLSPSVHRAAVPNDWEPSHCTSKPPANVGTNNRKRMTSTGSSSPSVGHWQRPQKSSRTARRTNFVPIASSNDDSPALDSASDVTGNDLGSGFVRRLAGNSPQQIKLKGDSSTSAALSESEESGVAEIKPKEKRRKAEEIDQKAGQNVQKVSSLVLPTRKNKLVSGEEYGDGVRRQGRTGRNFPTSRSLMPMASEKLGNIGTVKQLRSSRLGLEKSESRAGRPPTRKLSDRKAYARQKHTAISASADFLVGSEDGHEELLAAVKGVINSARAFSSQFWRQVERFFCLISEEDMAYWKQKIDVESSGLTSTPVPTHRDDCEAVANVGLTVCERDFEPGDPKGDSNGIPLCQRLISALISEECSSEDIKFDSCDTESEADGELDLCSLDHHSRFNSHLACHSTYNGYRITRKSGHDETESDVVDISSTGFNSSQNMPTLICSELQYATLGMNEKLILELQSIGIFPESVPEILQTDDEGICQDITRLEEHYQGQMSKRKCLLDGLLKSASVTKEHKEKDFEQRALDKLVVMAYEKYMACWGPGSSGGKNSSNKIAKQAALGLVKRTLDRCHQFEDTGKSCFNEPLYKDMLLAASAQLSIVQHLDGMEAESTKPYTSSFSLEARTGSMGSQQNPSQFSQNINNHDLYSSDISAAINGSSEQTSGKEDLWSNRVKKRELSLDDVVGTIGSSGAPSGTGSSLSNSTKGKRSERDRDGKGQSREVLPRNGTTKVGRPALSSAKGERKPKTKPKQKATKHSVSVNGLLGKLSEQPKTALSSVSKSNEMSANSTAKEKDECGMSEFDEHEPIDLSNLQLPGMDVLGVPDDLDDQGSVPPHDAVQVVLLGFIQVFMQISPPRLRENLVTDGCAKELQKIARASCRNFSQMFLMIQLSEKLICKGILLSKLD 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01420 1284 MobiDBLite consensus disorder prediction 406 469 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 223 255 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 228 246 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 61 80 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 486 502 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 550 570 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 506 525 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 268 342 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 268 283 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 1068 1083 - -
Cca08g01420 1284 PANTHER PLANT/F27B13-30 PROTEIN 1 1210 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 1003 1022 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 1084 1099 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 325 342 - -
Cca08g01420 1284 PANTHER OS05G0107300 PROTEIN 1 1210 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 354 372 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 354 526 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 1063 1179 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 1133 1165 - -
Cca08g01420 1284 MobiDBLite consensus disorder prediction 299 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01420 Cca-Chr8 42402927 42413974 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01420 - - gmx:100812435 1982.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01420 08 42402927 42413974 Cca08g01420 08 42402927 42413974 ECH
Cca11g02500 11 52164799 52174290 Cca08g01420 08 42402927 42413974 PCT