Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02485 ATGGCGAGGCTGCTTCGTAACACTTCCCTTCTCACACGCTCCTTATTCCTTCCTCAGGGTTTTAAACTAGGAATATTTAGCTCTTCTCAGATTTTGAGCTTTTCAACTAAAGGTTTAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGGGAAGAGAACATGCCTAAAAAAGAGTTAGCTCTTCAACAAGCTCTTGATCAGATCACTTCTGCATTTGGAAAGGGATCTATCATGTGGCTTGGTCGCTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATATGGCACTGGGAGTTGGTGGACTTCCGAAGGGACGTGTTGTGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAGAAGCAAGGAGGTTATTGTGTCTTTGTTGATGCCGAGCATGCCCTTGATAAGACACTTGCAGAGTCTATTGGTGTGAATACTACGAACTTGCTTCTCTCTCAACCTGATTGTGGTGAACAAGCACTTAGTCTTGTGGACACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGCGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGTCAGGCACTTCGGAAATTGAGCCATGCCTTATCACTTTCTCAAAGTATATTAATTTTTATAAATCAGGTGAGGTCAAAGATTTCAACTTTCGGGGGATTTAGTGGGCCTACAGAAGTTACATGTGGTGGTAATGCATTAAAATTCTATGCTTCTGTGCGGCTAAATATCAGGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGGTTTTAGGAAGCCAGATTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCCCCATTTAAAACTGCTGAATTTGAACTTCAATTTGGCAAGGGTATATGTAAAGAAACAGAGATTATAGATTTGAGCGTAAAACACAAACTCATCTTAAAGGCTGGTGCAATGTATTACTATAACGAGCAGAGTTTCCGCGGTAAGGAAGCCTTCAAGAGCTTCCTAGCTGATAATATTAGAGCATTAGAAGATCTTGAAATGAAGCTCAGGGAGAAGCTTCTTAACGCTGAGACAGAAAAGACACAAGAGTCAAATGTAATTAATGGAGATGGAGGTGTTATAGAAGAAATTTCAACAGTTGATTCCACCGACGAAGAAGCCTCAGTTGTTGTAGAAGCATGA 1266 0.4194 MARLLRNTSLLTRSLFLPQGFKLGIFSSSQILSFSTKGLRRSKSDGSDSGEENMPKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDMALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTTNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQSILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIRRIGFVKKGEEVLGSQILVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVKHKLILKAGAMYYYNEQSFRGKEAFKSFLADNIRALEDLEMKLREKLLNAETEKTQESNVINGDGGVIEEISTVDSTDEEASVVVEA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02485 421 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cca11g02485 421 SMART AAA_5 110 284 IPR003593 -
Cca11g02485 421 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 Gene3D - 87 393 IPR027417 -
Cca11g02485 421 ProSiteProfiles RecA family profile 2. 255 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cca11g02485 421 Coils Coil 367 390 - -
Cca11g02485 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Cca11g02485 421 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cca11g02485 421 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PANTHER RECA 1 412 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 412 - -
Cca11g02485 421 CDD recA 56 383 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca11g02485 421 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02485 Cca-Chr11 52025939 52031776 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02485 K03553 - gmx:100781271 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02485 11 52025939 52031776 Cca11g02485 11 52025939 52031776 ECH
Cca11g02485 11 52025939 52031776 Cca08g01438 08 42675260 42681612 PCT