Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01438 ATGGCGAGGCTGCTTCGCAACGCCAACACTTCCCTCCTCAAACGTTCCCTCTTCCACTCCGACCTTCTAACGCGCTTTTGCCTTGAACCAGGAGTATTGGGCACGTCTAAAATTTTGAGCTTTTCAACCCATAAAGGTAAAAGGAGGTCTAAATCAGATGCAAGTGACTCAGGTGAAGAAAACATGTCTAAGAAAGATTTGGCCCTGCAGCAAGCTATTGATCAGATCACCTCTGCTCATGGAAAGGGGTCTATCATGTGGCTTGGTCGTTCCGTGGCACCAAAAAATGTACCTGTGGTGTCTACTGGTTCTTTTGCTCTGGATATAGCACTTGGGGTTGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACCCTTGCTCTGCATGTGATTGCAGAAGCACAAAAGCTAGGAGGCTATTGCGCCTTTGTTGATGCTGAGCATGCACTGGATAAGACACTTGCAGAGTCAATTGGTGTAAATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCAGGAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGGAAATTGTGTCACTCCTTGTCACTTTCACAGTGTATATTGGTTTTTATAAACCAGGTGAGATCAAAGATTTCTACTTTTGGGGGATTTGCTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCACTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAACGAATAGGGTTTATCAAGAAGGGTGAAGAGACTTTAGCAAGCCAGGTCCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGCAAGGGTATAAGTAGAGAAGCCGAGATCATAGAGTTGAGCATAAAATACAAAATTATAAGGAAGAGTGGTTCATTTTATGAATATAATGGCCAAAATTTCCATGGTAAGGATGCTCTAAAGAGGTTCTTGGCAGACACAGATGGTGTACAAGAATTAGCAACAAAGCTTAGGGAGAAGATTCTTAATGCTGATCCAGAACTGGTGCCGGAGGTACCAGTGATGATGGGAGATGTCACGGAAGAAATGGTATCGCTTGATTCCACTGATGAAGCAGCAGCTATAGTAGCATGA 1275 0.4463 MARLLRNANTSLLKRSLFHSDLLTRFCLEPGVLGTSKILSFSTHKGKRRSKSDASDSGEENMSKKDLALQQAIDQITSAHGKGSIMWLGRSVAPKNVPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLAESIGVNTKNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGFAGPTEVTCGGNALKFYASVRLNIKRIGFIKKGEETLASQVLVKVVKNKHAPPFKTAQFELEFGKGISREAEIIELSIKYKIIRKSGSFYEYNGQNFHGKDALKRFLADTDGVQELATKLREKILNADPELVPEVPVMMGDVTEEMVSLDSTDEAAAIVA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01438 424 MobiDBLite consensus disorder prediction 46 63 - -
Cca08g01438 424 Hamap Protein RecA [recA]. 65 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 Gene3D - 95 391 IPR027417 -
Cca08g01438 424 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 331 IPR027417 -
Cca08g01438 424 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Cca08g01438 424 MobiDBLite consensus disorder prediction 44 63 - -
Cca08g01438 424 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 PRINTS RecA protein signature 307 336 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 PRINTS RecA protein signature 360 377 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 SMART AAA_5 118 292 IPR003593 -
Cca08g01438 424 PANTHER RECA 1 415 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 SUPERFAMILY RecA protein, C-terminal domain 332 386 IPR023400 -
Cca08g01438 424 ProSiteProfiles RecA family profile 2. 263 336 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Cca08g01438 424 TIGRFAM tigrfam_recA: protein RecA 65 386 IPR013765 GO:0003697|GO:0005524|GO:0006281
Cca08g01438 424 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 415 - -
Cca08g01438 424 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01438 Cca-Chr8 42675260 42681612 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01438 K03553 - gmx:100798983 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01438 08 42675260 42681612 Cca08g01438 08 42675260 42681612 ECH
Cca11g02485 11 52025939 52031776 Cca08g01438 08 42675260 42681612 PCT