Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02479 ATGGCTCTAAACCACCCTCTTTCAACCTACTTCATACTACTGCTGATAACCATAACCCGTTTGATATCCATTGTAGGTAAAACCGAGCAGTGGAAGAAAGCTCCTATTCTACAAGAGCTTGACATTGACAATATATCCCTTAAGTTCCACGACGACCCTGAAACCATTCAAATAGCTTCTAGGGACTATGGCAACATCGTGCATGAATTCCCAAGATCTGTGTTTCGTCCATCTTCCATAGACGACATAGTCACCTTGATAAAATCCTCATACAATAGCCCTTCCCCTTTTCACATAGCTGCGAGGGGCCAAGGCCACTCCACCAATGGACAAGCCATGGCTCGTGAAGGGGTCGTGGTTGACATGGCCACCCTCAGAAAACAAAGAAATGGGGTTGCCATTAATGTCTCTAAGGACCCTTTGATTGGCCACTATGCTGATGTTGGAGGGGAACAACTTTGGATTGATGTGCTACATTCCACGCTTGAACATGGACTTGCACCAGTTTCTTGGACTGATTATTTGTACTTGACCGTGGGAGGGACACTTTCCAATGCTGGGATTAGTGGCCAGAGTTTCCGTTATGGTCCTCAAATCAGCAACGTTCACGAAATGGATGTCATCACTGGAAAAGGAGAGTTCGTAACATGCTCTTGGCAGAAGAACTTGGAGTTATTCCACGCGGTTCTTGGTGGCTTAGGACAATTTGGAGTTATAGCAAGAGCGAGAATTGCTCTCGAGCCAGCCCCCAAAAGGGTTAAGTGGGTCAGGCTACTTTATAGTGACTTTTCTGCTTTTACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGACTGCATTGGATTTTCTGGAAGGGATTCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTATATCTGACCATCCTAGAATAGCTTCTTTAATCACTCAACACAGCATCATCTATTGCCTTGAAGTGGCTAAATATTATGATGACCAAACCGAGAAAAATGTGGACAAGGAAATTAAAGTTTTGCTCCAAGGACTGGTCTATATCCCTGGATTTTATTATGAGAAAAATGTCTCATACGTTGAGTTCCTGAATAGAGTCCGAAGTGGAGAGTTGAAGCTTCAGTCACAAGGACTATGGGATGTTCCTCACCCATGGCTTAACTTTTTTATACCAAAATCACAAATCTTGGATTTTGATTCAGGAGTGTTCAGAGATATAGTTCTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTACCCCATGAATAGAAACAAgtgggacgataggatgtcagcatctataccagaagaggatgtgttctacacagttggctttttgcactcaagtgggtttgataattggaaggaatatgatgctcaaaacagagaaattttggagttctgtagtgatgctggcattgaggttaagcaatatcttcccaatcacacaacacaagaagattggtcaaaccattttggtgctaaatgggttacattcttagaaaggaaacgtcagtttgatccaagaatgattctatcaccagggcagaaaatcttcGACAAACAATTACAACAAGCATTTTAA 1611 0.3513 MALNHPLSTYFILLLITITRLISIVGKTEQWKKAPILQELDIDNISLKFHDDPETIQIASRDYGNIVHEFPRSVFRPSSIDDIVTLIKSSYNSPSPFHIAARGQGHSTNGQAMAREGVVVDMATLRKQRNGVAINVSKDPLIGHYADVGGEQLWIDVLHSTLEHGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSWQKNLELFHAVLGGLGQFGVIARARIALEPAPKRVKWVRLLYSDFSAFTKDQERLISINGRKQKTALDFLEGILLMNQGPINNWRSSFFPISDHPRIASLITQHSIIYCLEVAKYYDDQTEKNVDKEIKVLLQGLVYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWDVPHPWLNFFIPKSQILDFDSGVFRDIVLKRNISSGPVLVYPMNRNKWDDRMSASIPEEDVFYTVGFLHSSGFDNWKEYDAQNREILEFCSDAGIEVKQYLPNHTTQEDWSNHFGAKWVTFLERKRQFDPRMILSPGQKIFDKQLQQAF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02479 536 Gene3D - 122 251 IPR016169 -
Cca11g02479 536 Pfam FAD binding domain 71 218 IPR006094 GO:0050660
Cca11g02479 536 Gene3D - 252 487 IPR016170 -
Cca11g02479 536 Gene3D - 52 528 IPR016167 -
Cca11g02479 536 ProSiteProfiles PCMH-type FAD-binding domain profile. 67 249 IPR016166 GO:0071949
Cca11g02479 536 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 12 528 - -
Cca11g02479 536 SUPERFAMILY FAD-binding/transporter-associated domain-like 49 248 IPR036318 GO:0050660
Cca11g02479 536 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 71 106 IPR006093 GO:0016491
Cca11g02479 536 PANTHER GULONOLACTONE OXIDASE 12 528 - -
Cca11g02479 536 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 250 528 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca11g02479 536 SUPERFAMILY FAD-linked oxidases, C-terminal domain 250 528 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02479 Cca-Chr11 51966330 51970407 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02479 K00279 - gmx:100787676 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02479 11 51966330 51970407 Cca11g02479 11 51966330 51970407 ECH
Cca11g02479 11 51966330 51970407 Cca08g01447 08 42991071 42997678 PCT