Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01447 ATGGTACTATGGCTATCGAGCATATTGCTCACACCAGCACAATCACATCAACGATGGTTGTCAGCATTCCACCCACCCAAAGACCTTGCTCCAAAGTTTACTCGTAACCCTCAAGCCCTTTTACTAGCTTCAACCGATTATGGACACGTAGTTCACAAGACCCCATGGGCAGTTTTTGAGCCATGTTCCGTTGGTGATATCTCGAGCTTGATAAATTTCTCAAACTCTCTTCCCACTCCTTTCACCATAGCCACTAGAGGCCAAGGCCACTCGGTTCTTGGACAAGCCATGACGCGAGATGGGGTGGTGCTGAATATGACACACCTCAGCAATTTCAAACATGGGTCAGGGATTTTAGTGTCTTGTTTTCCATTGGGTTATTGTTATGCTGATGTAGGTGGTGAACAAATGTGGATTAATGTGTTGAATGCAACCCTTAAACATGAACTCACTCCTCTGTCTTTCACTAACTACTTGTATTTGTCGGTTGGAGGCACGCTCTCTAATGCTGGCATCAATGGTCGAACCTTTCGATTCGGACCTCAGATATCTAATGTTCTTGAATTGGACGTTGTTACAGGGAAAGGAGAATTTGTGACTTGCTCTCCCGAGAAAAATTCAGAAGTATTTTATGCTGTTCTTGGAGGATTAGGTCAATTTGGAGTGATAACAAGAGCAAGAATACCTCTAGCACCTGCACCCACGAAGGTTTATAGGATCCATCTGCTTTACAACAACTTCACGACATTTTCTAAAGACCAAGAATATTTGATCTCATTTAATGAAAGGAACGATACTAATGCAGCAGATTTTATAGATGGTCAACTTCTATTGAATAATCAATCGTCACTAGATCTTTCCTTTTACCCAACTTCTGATCAACAAAGAATAACTTCCTTGGTAACTCAATATGGCATTATCTACGTCTTAGAGATTGTCAAATATTATGACAACAACTTTGAAGCACGCGCCAAACAGGAAGTTGCAAATTTGGTCAAAGGGTTAAGTTTTTTACCTACATTTATGTTCAAAAGAGATGCATCATACGAGGAGTTTCTGGATAGACTTCATGCTTTGGAGCTATTGCTTACGCCGCAAGGACTTTGGGATGTTCCTCATCCTTGGCTGAACATGTTTGTTCCAAGTTCTCGAATCTCAGATTTTAATGAAGGTGTATTCAAGGACATTATTCTTAAGCAAAATATATCTACCGGGGGATGTTTCGTCTACCCCATGAACCGAAACAAGTGGGATGATAGGATGTCAGCAGTTATACCAGAGGAAGATGTTTTCTATTCTGTAGATATTTTTCATTCTGCATCTGGGTTAGATGAGGTGGAGAAATATCAAGTTCAAAACCAAAACATATTACAGTTTTGTAAAGATGCAGATATTAAGATCAAGGAATATCTTGCCGGTAACAAAACACATCAAGAATGGGTGGAACACTTCGGCCTCAAATGGAAACTTTTTGAAGATAGAAAAGCTAAATTTGATCCCAACAAAATATTATCACCTGGCCAAGGAATTTTCCAATAG 1539 0.4009 MVLWLSSILLTPAQSHQRWLSAFHPPKDLAPKFTRNPQALLLASTDYGHVVHKTPWAVFEPCSVGDISSLINFSNSLPTPFTIATRGQGHSVLGQAMTRDGVVLNMTHLSNFKHGSGILVSCFPLGYCYADVGGEQMWINVLNATLKHELTPLSFTNYLYLSVGGTLSNAGINGRTFRFGPQISNVLELDVVTGKGEFVTCSPEKNSEVFYAVLGGLGQFGVITRARIPLAPAPTKVYRIHLLYNNFTTFSKDQEYLISFNERNDTNAADFIDGQLLLNNQSSLDLSFYPTSDQQRITSLVTQYGIIYVLEIVKYYDNNFEARAKQEVANLVKGLSFLPTFMFKRDASYEEFLDRLHALELLLTPQGLWDVPHPWLNMFVPSSRISDFNEGVFKDIILKQNISTGGCFVYPMNRNKWDDRMSAVIPEEDVFYSVDIFHSASGLDEVEKYQVQNQNILQFCKDADIKIKEYLAGNKTHQEWVEHFGLKWKLFEDRKAKFDPNKILSPGQGIFQ 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01447 512 Gene3D - 38 511 IPR016167 -
Cca08g01447 512 PANTHER GULONOLACTONE OXIDASE 5 512 - -
Cca08g01447 512 SUPERFAMILY FAD-binding/transporter-associated domain-like 33 232 IPR036318 GO:0050660
Cca08g01447 512 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 234 511 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca08g01447 512 Gene3D - 106 235 IPR016169 -
Cca08g01447 512 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 5 512 - -
Cca08g01447 512 SUPERFAMILY FAD-linked oxidases, C-terminal domain 235 511 IPR016164 GO:0003824|GO:0050660
Cca08g01447 512 Pfam FAD binding domain 57 202 IPR006094 GO:0050660
Cca08g01447 512 Gene3D - 236 470 IPR016170 -
Cca08g01447 512 ProSiteProfiles PCMH-type FAD-binding domain profile. 51 233 IPR016166 GO:0071949
Cca08g01447 512 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 55 90 IPR006093 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01447 Cca-Chr8 42991071 42997678 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01447 K00279 - gmx:100793158 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02479 11 51966330 51970407 Cca08g01447 08 42991071 42997678 PCT