Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02478 ATGGCAAGTTATTTTAGACTTTCAAAACCTTTGATTATGCTATGGTTAACCTACATAGTGGTCACACATGCAGAATCACAACCATGGTCATTACTCCAAGCACCAAAAGAGCTAACCCTAAAGCTTATTCGTGACCCCGTGACCCTTTCACTAGCTTCAACAGATTATGGCCACATAGTTCATGACAACCCTTTTGCAATTTTCGCACCATCCTCCATTAGTGACATATCCGACTTGATAAAATTCTCAAATTCTCTGCCCATCCCTTTCACCATAGCTCCTAGAGGGCAAGCACACTCGGTTCATGGACAAGCCATGACAAGTGATGGCGTTGTGATGAACATGACCGAGTTGAACGAGTTTAGAAATGGTGCTGGAATTGTTGTAGTGTCTGATGATGCAAGTGCTCCATATGCTGATGTGGGTGGTGAACAAATTTGGATTGATGTGTTGCATGCAACACTTGAACGTGGACTCACACCCCTCTCTTGGACTGATTACTTGTTCTTATCGGTTGGTGGAACTCTCTCCAATGCCGGCATAAGTGGCCAAACATTTAGGTTTGGTCCTCAGATTTCCAATGTTCATGAGTTGGATGTTGTTACAGGGAAAGGAGACCTAGTGACTTGTTCTGCGGAGAACAACTCAGAGTTGTTTTACAGTGTTCTAGGAGGTTTAGGTCAATTTGGGATTATAACGAGAGCAAGAATAGCCCTTGGCCCCGCACCAACCAGGGTGAAACGGCTCCATTTGTTTTACAACGACTTTTCTGCATTTTCTGGAGACCAAGAACACTTGATTTCATTCAATGGAAGAAATGAGACTAATGCAGCTGATTATATAGAAGGGTTCCTTATGCTAAATCAGTCACCATTGGAGCTTTCTTTTTATCCAGAATCTGATCGTCCTCGCATAACTTCCCTTGTAACTCAATACGGAATCATCTACATCATAGAGCTTGTCAAATATTACGACAATAGTTCTCAAGAACATGTTGACGAGGATGTCAAACTTTTGGTCGAGGGGTTGAAGTTTGTTCCTACGTTTATGTTCGAAAAAGATGAATCGTACGAAGAGTTCCTAAACAGAGTTCATTCTGACGAGCTTATACTAAGATCACAAGGGCTTTGGGAGGTTCCTCATCCTTGGTTAAACCTCTTTGTTCCAGGATCTCGAATCTCGGATTTCGATGAAGGTGTGTTCAAGGGCATTATTCTGAAGCAAAATATTAAAGCAGGACTTGCCATAATCTACCCCGTGAACCAAACCAAgtgggatgataagatgtcagcagttacacctgatgaagaagttttctacgtggtgtcacttcttcatgcaactgggtttgatcagttagaggaatttcaggcacaaaaccaacagatattacagttctgtgtggactctggtattggtataaagcagtatcttccacagaacaaaacacacaatgaatgggagaaacattttggcccgaaatggaaaattttcaatcaaagaaaagctcagtttgatcccaacagaattttgtcacccggacaggggattttcAATTAA 1560 0.3449 MASYFRLSKPLIMLWLTYIVVTHAESQPWSLLQAPKELTLKLIRDPVTLSLASTDYGHIVHDNPFAIFAPSSISDISDLIKFSNSLPIPFTIAPRGQAHSVHGQAMTSDGVVMNMTELNEFRNGAGIVVVSDDASAPYADVGGEQIWIDVLHATLERGLTPLSWTDYLFLSVGGTLSNAGISGQTFRFGPQISNVHELDVVTGKGDLVTCSAENNSELFYSVLGGLGQFGIITRARIALGPAPTRVKRLHLFYNDFSAFSGDQEHLISFNGRNETNAADYIEGFLMLNQSPLELSFYPESDRPRITSLVTQYGIIYIIELVKYYDNSSQEHVDEDVKLLVEGLKFVPTFMFEKDESYEEFLNRVHSDELILRSQGLWEVPHPWLNLFVPGSRISDFDEGVFKGIILKQNIKAGLAIIYPVNQTKWDDKMSAVTPDEEVFYVVSLLHATGFDQLEEFQAQNQQILQFCVDSGIGIKQYLPQNKTHNEWEKHFGPKWKIFNQRKAQFDPNRILSPGQGIFN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02478 519 Gene3D - 115 244 IPR016169 -
Cca11g02478 519 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 8 519 - -
Cca11g02478 519 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 243 518 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca11g02478 519 Gene3D - 245 477 IPR016170 -
Cca11g02478 519 Pfam FAD binding domain 66 211 IPR006094 GO:0050660
Cca11g02478 519 PANTHER GULONOLACTONE OXIDASE 8 519 - -
Cca11g02478 519 SUPERFAMILY FAD-binding/transporter-associated domain-like 42 241 IPR036318 GO:0050660
Cca11g02478 519 ProSiteProfiles PCMH-type FAD-binding domain profile. 60 242 IPR016166 GO:0071949
Cca11g02478 519 Gene3D - 46 518 IPR016167 -
Cca11g02478 519 SUPERFAMILY FAD-linked oxidases, C-terminal domain 243 519 IPR016164 GO:0003824|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02478 Cca-Chr11 51947841 51952152 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02478 K00279 - gmx:100816815 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02478 11 51947841 51952152 Cca08g01454 08 43106427 43108735 PCT