Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01454 ATGGCAAGCAATGTAGTGTTTTCGAACATTGTGGTTGTGCTATGGCTATGCAGCATATTGGTCATGACACCAGCAGAATCACGTCGACGAGCATTGGAAGCACCACAAGAGTTGGCACAAAAATTTAGTAGAAACCCTGAAACGCTTTCGCTAGCGTCAACTGACTATGGGCACATAGTTTACAAAACCCCATGGGCAGTGTTTGAGCCAAGTTCCATTGTTGATATAGCGACCTTGATAAGCTTCTCAAACTCTCTTCCAATTCCTTTCACCATAGCCACAAGAGGCCGAGGCCACTCGGTTCTTGGACAAACCATGACACGAGATGGGGTGGTTCTCAATATGACACACCTCAACGATCACTTCACAGATATTAATAATGCTTCAGTCTCAGCATTTTCAATCACTTGTCTTCCATTGGGTTTTTGTTATGCTGATGCAGGTGGTGAGCAATTGTGGACTGATTTGCTGAGTGTAACCCTTAAACTTGGTCTCACACCCCACGCTTTGACTAACTACTTGTATTTGACCATTGGAGGCACCATCTCTAATGCTGGCATCAGTGGCCGCACATTTCGAGTTGGACCTCAGATCTCTAATGTTCTCGAATTGGACGTTATTACAGGGAAAGGAGAATTTGTGACTTGCTCTCCTCTGATAAACTCAGAACTATTTTATGCTGTTCTTGGAGGATTAGGTCAATTTGGGGTTATAACAAGAGCGAGAATACCTCTAGGGCCTGCACCCAAGAGGTTGTTTTGGCTTCATTTGCTTTACACCAACTTCACCACATTTTCTAGAGACCAAGAGTATTTAATCTCGTTGAATGACACTATTGCACCAGATTTTGTAGATGGTCAAGTTCTATTGTCCAATCAAGACCAACCAGATCTTTCCTCTTATTCAACTTCAGATCAACCAAGGGTAACTTCCTTGATAAAACAATATGGCATTGTCTACGTCTTAGAGCTTGTCAAATATTATGACAACAACTCTCAATCACGAGTCGAACAGGAAGTTGAAAATTTGGTCAAAGGCTTAAATTTCTTACCTAAGTTTAGGTTCAAAAAAAATGCATCGTATGAGGAGTTTATAGACAGGGTTCATGCTGCTGAGCTTTACGCTCTCAGACCACGTGGACTTTGGGATGTTCCTCATCCTTGGCTGAACATGTTTGTTCCAAGTTCTCGAATCGTTGATTTTAATGAAGGTGTATTCAAGGGCATTATTTTAAAGCAAAATATTTCTCCTGGTACTTGTTTAGTCTACCCCATGAAACGAAACAAGTGGGATGGTAGGATGTCAGCAGTTATACCAGACGAAGATGTTTTCTACTCTGTAAATCTTTTTCATTATGTATCTGCGTCATATAACGTGAAGGATTATGAAGCTCAAAACCAAAAAATATTAGAGTTTTGTAAGGATGCTGGTATTAAGATTAAGGAATATCTTGCCGGAAACAAAACACATCAACAATGGGTGGAACACTTCGGTTCAAAATGGAAACTTTTTGAAGAAAGAAAACTTGAATTTGATCCCAAAAGAATACTGTCACCTGGACAAGGGATTTTTCAATAA 1578 0.4043 MASNVVFSNIVVVLWLCSILVMTPAESRRRALEAPQELAQKFSRNPETLSLASTDYGHIVYKTPWAVFEPSSIVDIATLISFSNSLPIPFTIATRGRGHSVLGQTMTRDGVVLNMTHLNDHFTDINNASVSAFSITCLPLGFCYADAGGEQLWTDLLSVTLKLGLTPHALTNYLYLTIGGTISNAGISGRTFRVGPQISNVLELDVITGKGEFVTCSPLINSELFYAVLGGLGQFGVITRARIPLGPAPKRLFWLHLLYTNFTTFSRDQEYLISLNDTIAPDFVDGQVLLSNQDQPDLSSYSTSDQPRVTSLIKQYGIVYVLELVKYYDNNSQSRVEQEVENLVKGLNFLPKFRFKKNASYEEFIDRVHAAELYALRPRGLWDVPHPWLNMFVPSSRIVDFNEGVFKGIILKQNISPGTCLVYPMKRNKWDGRMSAVIPDEDVFYSVNLFHYVSASYNVKDYEAQNQKILEFCKDAGIKIKEYLAGNKTHQQWVEHFGSKWKLFEERKLEFDPKRILSPGQGIFQ 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01454 525 Gene3D - 251 483 IPR016170 -
Cca08g01454 525 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 524 IPR016164 GO:0003824|GO:0050660
Cca08g01454 525 SUPERFAMILY FAD-binding/transporter-associated domain-like 41 247 IPR036318 GO:0050660
Cca08g01454 525 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 10 525 - -
Cca08g01454 525 PANTHER GULONOLACTONE OXIDASE 10 525 - -
Cca08g01454 525 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 64 99 IPR006093 GO:0016491
Cca08g01454 525 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 524 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca08g01454 525 Gene3D - 115 250 IPR016169 -
Cca08g01454 525 Pfam FAD binding domain 66 217 IPR006094 GO:0050660
Cca08g01454 525 Gene3D - 46 524 IPR016167 -
Cca08g01454 525 ProSiteProfiles PCMH-type FAD-binding domain profile. 60 248 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01454 Cca-Chr8 43106427 43108735 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01454 K00279 - gmx:100793158 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02478 11 51947841 51952152 Cca08g01454 08 43106427 43108735 PCT