Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02477 ATGGGAGACCCAGCAAGTTTCATAGCGAACTGGTTAACTCCTTCTTACCTCTTCATCTTAGTGAACCTGGTCATAGGCACCATAGCAATCACTTGTCGCTTCGCTTCCACACCCGAAGACCAACCCCAACAACTCCTTCGCTCACCCTCTCTTCTTCAACGAGTCAGGTCCTTTACTTGCACTCATCATCAACCAGACACCACCGCTCACACCCAACCCCAACCCCAACCCCAACTCCTTCCAACTCCCTCATTATTGGAACGAGTCGCCTCCTTCAATCTCTCTCTCCACAAACAACACCCCGCACCTGCAGAAACACGACATCTTcagccccaaccccaacacaaacaccagggagagcccgagcccgaacctcaacccgagcctcaaAAACCGGAACTGGTTCGGTGTCCGTCGCTGCTGCAGCGGATTCAGTCCATGAACTTGTCGCGGTTCTACAGATCGGACTCCATGCAGCGAGAGCCACaggaggaggaggaggaggaggtggagaggcggaggccggcgacggcgacggCGAGGATTGAAACGGCGTCGTGCAGAGAAGACGAAGAGGTGGACGCCAAAGCTGATGATTTCATCAACAGTTTCAAGAAGCAGTTGAGGTTGCAGAGGATCGAGTCCCTTCTCCGTTACAGAGGAACAACATAA 672 0.4286 MGDPASFIANWLTPSYLFILVNLVIGTIAITCRFASTPEDQPQQLLRSPSLLQRVRSFTCTHHQPDTTAHTQPQPQPQLLPTPSLLERVASFNLSLHKQHPAPAETRHLQPQPQHKHQGEPEPEPQPEPQKPELVRCPSLLQRIQSMNLSRFYRSDSMQREPQEEEEEEVERRRPATATARIETASCREDEEVDAKADDFINSFKKQLRLQRIESLLRYRGTT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02477 223 MobiDBLite consensus disorder prediction 152 179 - -
Cca11g02477 223 Pfam Cotton fibre expressed protein 190 221 IPR008480 -
Cca11g02477 223 MobiDBLite consensus disorder prediction 100 132 - -
Cca11g02477 223 PANTHER DUF4408 DOMAIN PROTEIN 155 221 - -
Cca11g02477 223 PANTHER DUF4408 DOMAIN PROTEIN 5 65 - -
Cca11g02477 223 MobiDBLite consensus disorder prediction 110 129 - -
Cca11g02477 223 Pfam Domain of unknown function (DUF4408) 6 34 IPR025520 -
Cca11g02477 223 MobiDBLite consensus disorder prediction 157 179 - -
Cca11g02477 223 PANTHER COTTON FIBER (DUF761) 5 65 - -
Cca11g02477 223 PANTHER COTTON FIBER (DUF761) 155 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02477 Cca-Chr11 51939765 51940436 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02477 - - ccaj:109808780 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02477 11 51939765 51940436 Cca11g02477 11 51939765 51940436 ECH
Cca11g02477 11 51939765 51940436 Cca08g01462 08 43354519 43355997 PCT