Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02471 ATGGGTTCACGGGTTCTAATGGAGAATTTGCCAAGGGGGAATTTTTATACCCTGCTGTTATTTTTGTGTGTTTGTGCAGTCACGGTCACAGCCTCTGTGACTTATGATCACAAAGCCATTGTTGTTAATGGTCAGAGAAGAATTTTGTTTTCTGGCTCCATCCACTACCCAAGAAGCACACCTCAGATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCTTAGATGTTATCCAAACCTATGTGTTTTGGAATGGACACGAGCCTTCTCCTGGAAAGTATTATTTCGAGGATAGGTACGACTTGGTTAAATTCATCAAGCTGGTGCAGCAAGCTGGCCTTTATGTTCATCTTCGCATTGGTCCCTATATATGTGCTGAGTGGAACTTTGGGGGATTTCCTGTTTGGCTCAAGTATGTTCCGGGTATTGCTTTCAGAACAGACAATGAACCTTTCAAGGCGGCAATGCAAAAATTTACTGAGAAGATTGTCAGCATGATGAAGGCGGAGAAATTGTTCCAGACGCAGGGAGGTCCAATAATTATGTCACAGATAGAAAACGAATTTGGACCAGTAGAGTGGGAAATTGGTGCTCCTGGAAAAGCTTATACCAAATGGGCTGCTCAAATGGCTGTGGGTTTAGATACTGGTGTCCCCTGGATTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGATTCTACTGCGAAAACTTTACTCCCAACGAGAAATACAAACCCAAGATGTGGACAGAGAATTGGACTGGATGGTACACCGAGTTTGGTGGTGCTGTCCCTCGTAGACCTGCAGAAGACTTGGCTTTCTCAGTTGCCAGATTCGTACAGAATGGTGGTTCATTTGTTAATTATTATATGTACCATGGAGGAACTAACTTTGAAAGGACATCCGGTGGCCCCTTCATTGCCACCAGCTACGACTATGATGCTCCAATTGATGAATACGGACTTCTAAATGAACCAAAATGGGGGCATTTGAGAGATTTGCATAAAGCAATAAAGCTATGTGAGCCAGCTTTAGTGTCTGTAGATCCTACAGTGTCATGGCCTGGAAATAACCTTGAGGTACACGTGTTCAAGACTTCTGGTGCTTGTGCTGCATTCCTTGCAAATTATGACACCAAATCTTCTGCAACAGTTACGTTTGGAAATGGAAAATATGACCTACCACCTTGGTCTATCAGCATCCTTCCTGACTGCAAAACTGCAGTTTTCAACACTGCAAGGCTTGGTGCTCAAAGCTCCCTGATGAAGATGACTGCTGTAAACAGTGCATTTGATTGGCAGTCATACAATGAAGAGCCTGCATCGTCCAATGAAGATGATTCCTTGACAGCATATGCACTCTGGGAGCAGATTAATATCACTAGAGATTCTACCGATTATTTGTGGTATATGACAGATGTCAACATTGATGCAAATGAAGGTTTTATAAAGAATGGACAATCTCCTGTTCTTACTGTAATGTCAGCAGGCCATGCTTTGCATGTTTTCATTAATGGTCTACTTTCAGGTACCGTGTACGGTGGGTTGGACTTTCCTAAATTAACATTTAGTGACAGTGTTAAGTTGAGGGTGGGCAATAACAAGATTTCGTTACTTAGTATTGCCGTGGGTCTCCCGAATGTGGGGGTGCACTTTGAGACATGGAATGCTGGGGTGTTGGGTCCAGTCACACTTAAGGGTCTAAATGAGGGGACTAGAGACTTGGCTAAACAGAAATGGTCTTACAAGATTGGTCTCAAGGGAGAAGCCTTAAACCTTAACACTGTGAGTGGTAGTACCTCCGTTGAATGGGTGCAGGGATCATTGTTGGCTAAAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCACACCAGCAGGCAATGATCCACTGGCTCTAGACATGATTAGCATGGGAAAGGGTCAAGTTTGGATAAATGGTCGGAGCATTGGACGCCATTGGCCTGGATATATAGCACACGGTGGTTGTGGAGATTGTTATTATGCTGGAACTTACACTGATAAAAAATGCCGGACAAGTTGTGGAGAACCCTCCCAGAGATGGTACCATATTCCTCGGTCGTGGCTGAACCCAAGTGGGAACTATCTGGTTGTGTTTGAAGAATGGGGAGGTGACCCTACTGGAATATCTTTGGTGCAAAGAGAAACAGAAAGTGTGTGTGCTGATATATATGAAGGGCAACCAACTCTGAAGAACAGGGAGATGCTAGAGTCTGGCAAAGTTAATAGACCAAAGGCTCACTTGTGGTGTCCACCTGGGCAAAAGATCTCACAGATTAAATTTGCTAGTTATGGATTGCCACTGGGAGCGTGTGGAAACTTTAGAGAGGGAAACTGTCATGCTCATAAATCATATGATGCTCCGCAAAAGAACTGCATCGGCAAGCAATCTTGCTTGGTGACTGTAGCTCCTGAAGTTTTTGGTGGGGACCCATGTCCGGGAATTGCAAAGAAGCTCTCACTTGAGGCACTATGCAGCTAG 2526 0.4418 MGSRVLMENLPRGNFYTLLLFLCVCAVTVTASVTYDHKAIVVNGQRRILFSGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFIKLVQQAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTEKIVSMMKAEKLFQTQGGPIIMSQIENEFGPVEWEIGAPGKAYTKWAAQMAVGLDTGVPWIMCKQEDAPDPVIDTCNGFYCENFTPNEKYKPKMWTENWTGWYTEFGGAVPRRPAEDLAFSVARFVQNGGSFVNYYMYHGGTNFERTSGGPFIATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVSWPGNNLEVHVFKTSGACAAFLANYDTKSSATVTFGNGKYDLPPWSISILPDCKTAVFNTARLGAQSSLMKMTAVNSAFDWQSYNEEPASSNEDDSLTAYALWEQINITRDSTDYLWYMTDVNIDANEGFIKNGQSPVLTVMSAGHALHVFINGLLSGTVYGGLDFPKLTFSDSVKLRVGNNKISLLSIAVGLPNVGVHFETWNAGVLGPVTLKGLNEGTRDLAKQKWSYKIGLKGEALNLNTVSGSTSVEWVQGSLLAKKQPLTWYKTTFSTPAGNDPLALDMISMGKGQVWINGRSIGRHWPGYIAHGGCGDCYYAGTYTDKKCRTSCGEPSQRWYHIPRSWLNPSGNYLVVFEEWGGDPTGISLVQRETESVCADIYEGQPTLKNREMLESGKVNRPKAHLWCPPGQKISQIKFASYGLPLGACGNFREGNCHAHKSYDAPQKNCIGKQSCLVTVAPEVFGGDPCPGIAKKLSLEALCS 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02471 841 SUPERFAMILY Galactose-binding domain-like 406 576 IPR008979 -
Cca11g02471 841 Pfam Galactose binding lectin domain 763 840 IPR000922 GO:0030246
Cca11g02471 841 SUPERFAMILY Galactose-binding domain-like 586 744 IPR008979 -
Cca11g02471 841 Gene3D - 593 735 - -
Cca11g02471 841 ProSiteProfiles SUEL-type lectin domain profile. 755 841 IPR000922 GO:0030246
Cca11g02471 841 Pfam Beta-sandwich domain in beta galactosidase 352 421 IPR041392 -
Cca11g02471 841 PANTHER BETA-GALACTOSIDASE 16 729 - -
Cca11g02471 841 SUPERFAMILY (Trans)glycosidases 32 349 IPR017853 -
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 43 60 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 64 82 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 119 138 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 176 191 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 255 270 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 292 307 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 312 328 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Cca11g02471 841 Pfam Glycosyl hydrolases family 35 40 344 IPR031330 -
Cca11g02471 841 Gene3D - 750 841 IPR043159 -
Cca11g02471 841 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 178 190 IPR019801 GO:0004553|GO:0005975
Cca11g02471 841 Gene3D Glycosidases 26 348 - -
Cca11g02471 841 PANTHER BETA-GALACTOSIDASE RELATED 16 729 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02471 Cca-Chr11 51849112 51855302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02471 1 841 Glycoside Hydrolase AT3G13750 69.929 0.0 1257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02471 - - gmx:106795462 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02471 11 51849112 51855302 Cca11g02471 11 51849112 51855302 ECH
Cca11g02471 11 51849112 51855302 Cca08g01467 08 43513684 43520261 PCT