Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01467 ATGGGGAAGAGAGAGTTTCATGGGGTGGCGTTGATGCTGTTGTTTTTGTGGGTTTGTGGCGTCACTGCCTCTGTGACTTATGACCACAGAGCCATTATAGTTGATGGCAAGAGAAGAATTTTGATCTCTGGCTCCATTCACTACCCGGGAAGCACACCTCAAATGTGGCCAGACCTTATTCAAAAGGCCAAAGATGGAGGCCTTGATGTTATCCAGACTTATGTGTTCTGGAATGGACATGAACCTTCTCCTGGAAAATACTATTTCGAAGATAGGTATGACTTGGTTAAGTTCGTGAAGCTAGTGCAGCAAGCAGGACTTTATGTTCATCTCCGTATTGGTCCTTACATATGTGCTGAATGGAACTTGGGGGGATTTCCTGTTTGGCTCAAGTATGTTCCAGGCATTGCTTTCAGAACCGACAACGAGCCTTTTAAGGCGGCAATGCAAAAATTCACAGCTAAGATTGTTAGCTTGATGAAAGAAGAGAAGTTGTTTCAATCTCAGGGTGGTCCCATAATTATGTCACAGATAGAGAACGAATATGGACCAGTGGAATATCAAATTGGTGCACCTGGAAAAGCATATACAAAATGGGCTGCTCAAATGGCTGTTGGTCTAGACACTGGTGTTCCATGGGTTATGTGCAAGCAAGAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGGGTATTACTGTGAAAACTACAAGCCCAACAACAACAAAAAACCCAAAATGTGGACTGAGAATTGGACTGGTTGGTACACTGAGTTCGGTGGTGCAATCCCTCTTAGACCAGCAGAAGACTTGGCATTCTCAGTTGCGAGATTCATTCAAAATGGTGGTTCATTTGTTAACTACTATATGTACCATGGAGGAACTAACTTTGGTCGGACATCTAGTGGCCTCTTCATTGCCACTAGCTATGACTATGACGCGCCTCTTGATGAATACGGACTTCAAAATGAACCAAAGTGGGGTCATTTGAGAGATTTGCATAAAGCAATAAAACAATGTGAGCCTGCTTTAGTTTCTGGAGATCCTAAAGTGACATCACTTGGATATAACCTTGAGGCACATGTGTTCTCCACCTCTGGTGCTTGTGCTGCATTCATCGCAAATTATGACACCAAATCTTCGGCAAAAGCTACATTTGGAAATGGACAATATGATCTACCACCTTGGTCTATTAGTATTCTTCCTGATTGCAAAACTGTTGTTTTCAACACAGCAAAGGTTGGTGTCGACAATTGGTTGAAAAAGATGACTCCTGTAAACAACGCATTTGCTTGGCAATCATATAATGAAGAACCTGCCTCGTCCAGTCAAGATGATTCCATTGCAGCAGATGCACTTTGGGAGCAGGTCAACGTGACCCGAGATTCTTCGGATTATTTGTGGTACTTGACAGATGTCAACATTGATGCTAATGAAGGTTTTATAAAGAATGGAAAATCTCCTATTCTTACCGTAATGTCAGCAGGCCATGTTCTCCATGTTTTCATTAATGGTCAACTTTCAGGAACTGTATATGGCGGATTGGGGAATCCTAAATTAACATTTAGTGACAGTGTGAACTTGAGGGTTGGCAATAACAAGATTTCTTTACTTAGTGTTGCCGTTGGTCTCCCGAATGTTGGCTTGCACTTTGAAACATGGAATGCGGGTGTGTTAGGTCCAATCACTTTGAAGGGTTTGAATGAGGGGACACGAGACTTGTCCCAACAGAAATGGTCTTATAAGGTTGGACTAAAAGGTGAAGCCTTGAGCCTACATACTATAAGTGGGAGTAACTCTGTTGAATGGGCACGAGGATCATTAGTGGCTACAAAACAACCTTTAACATGGTACAAGACAACTTTTAGTGCACCTGCGGGAAATGATCCATTGGCTCTAGATATGAATAGCATGGGAAAGGGTGAAGTATGGATAAATGGTCAGAGCATTGGTCGCCATTGGCCTGCATATATAGCACATGGTAGTTGTAATGCTTGTAATTATGCAGGATATTATACTGATAAAAAATGTCGGGCATATTGTGGAAAGCCATCTCAGAGATGGTATCATGTTCCTCGCTCATGGCTAAACTCAGGAAGTAACTTCTTGGTTGTGTTAGAAGAGTGGGGAGGTGACCCTAATGGAATTGCTTTGGTGAAAAGAACATGA 2169 0.4246 MGKREFHGVALMLLFLWVCGVTASVTYDHRAIIVDGKRRILISGSIHYPGSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFVKLVQQAGLYVHLRIGPYICAEWNLGGFPVWLKYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKEEKLFQSQGGPIIMSQIENEYGPVEYQIGAPGKAYTKWAAQMAVGLDTGVPWVMCKQEDAPDPVIDTCNGYYCENYKPNNNKKPKMWTENWTGWYTEFGGAIPLRPAEDLAFSVARFIQNGGSFVNYYMYHGGTNFGRTSSGLFIATSYDYDAPLDEYGLQNEPKWGHLRDLHKAIKQCEPALVSGDPKVTSLGYNLEAHVFSTSGACAAFIANYDTKSSAKATFGNGQYDLPPWSISILPDCKTVVFNTAKVGVDNWLKKMTPVNNAFAWQSYNEEPASSSQDDSIAADALWEQVNVTRDSSDYLWYLTDVNIDANEGFIKNGKSPILTVMSAGHVLHVFINGQLSGTVYGGLGNPKLTFSDSVNLRVGNNKISLLSVAVGLPNVGLHFETWNAGVLGPITLKGLNEGTRDLSQQKWSYKVGLKGEALSLHTISGSNSVEWARGSLVATKQPLTWYKTTFSAPAGNDPLALDMNSMGKGEVWINGQSIGRHWPAYIAHGSCNACNYAGYYTDKKCRAYCGKPSQRWYHVPRSWLNSGSNFLVVLEEWGGDPNGIALVKRT 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01467 722 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 170 182 IPR019801 GO:0004553|GO:0005975
Cca08g01467 722 PANTHER BETA-GALACTOSIDASE RELATED 5 722 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 SUPERFAMILY Galactose-binding domain-like 578 717 IPR008979 -
Cca08g01467 722 SUPERFAMILY Galactose-binding domain-like 398 568 IPR008979 -
Cca08g01467 722 Gene3D - 586 722 - -
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 35 52 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 56 74 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 111 130 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 168 183 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 247 262 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 284 299 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 304 320 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 613 627 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 PRINTS Glycosyl hydrolase family 35 signature 640 656 IPR001944 GO:0004553|GO:0005975
Cca08g01467 722 Gene3D Glycosidases 19 341 - -
Cca08g01467 722 SUPERFAMILY (Trans)glycosidases 25 341 IPR017853 -
Cca08g01467 722 Pfam Beta-sandwich domain in beta galactosidase 344 414 IPR041392 -
Cca08g01467 722 Pfam Glycosyl hydrolases family 35 32 336 IPR031330 -
Cca08g01467 722 PANTHER BETA-GALACTOSIDASE 5 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01467 Cca-Chr8 43513684 43520261 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01467 10 721 Glycoside Hydrolase AT3G13750 72.308 0.0 1096
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01467 - - gmx:100781959 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01467 08 43513684 43520261 Cca08g01467 08 43513684 43520261 ECH
Cca11g02471 11 51849112 51855302 Cca08g01467 08 43513684 43520261 PCT