Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02448 ATGATGTACGAGGTGGAACAGCAACGGTTTGAGCAACCTTTGGCAAAGATTGAgacgaggaagaagacggaaagaagtaaaggcacaggcatagaggaagagAGGCTTGAAATTGTCGACTTGAGTTCCATGTCCTTAGACTCCCTTCCCAACCCTTCTCTCAATTTAGCCACCATTTGCAAGTTGGACCTCTCCAATAACAATCTTCAGAATATACCGGAGTCCTTAACGGCGAGACTTCTGAACATGGTGGTGTTGGATGTGCACTCCAACCAGCTTAGGTCACTTCCGAATTCTATTGGCTGTCTCTCTAAGCTCAAGATTTTGAATGTCTCTGGCAACCTCATCGAATATCTTCCCAAATCAATTGAAAATTGCAGAAGCTTGGAAGAACTGAACGCGAACTTCAACAAGTTGAGCCAGCTCCCAGAGTCAATAGGGTTCGAGCTGATAAACCTGAAGAAGCTATCAGTGAACTGCAACAAGCTGGTGTTCCTTCCTCGGTCCACCTCTCACCTAACCGCTCTGAAGGTCCTGGATGCGCGCCTCAACTGCTTGAGGTCTCTGCCAGAAGACCTAGAGAATCTCATAAACCTGGAAGCCCTAAACGTCAGCCAGAACTTCCAGTACCTGGTGGCCCTACCCTACTCCATTGGCCTCCTCCTCTCCCTGGTCGAACTCGACGTCAGCTACAACAAGATCACATCCCTCCCGGACTCCATTGGCTGCCTCAAGAAGCTCCAGAAGCTCAGCCTCGAAGGCAACCCCCTCGCTTCGCCACCACCGGATGTCGTCGAGCAGGGGTTGCATGCGGTGAAGGAGTACCTCGTCCAGAAGATGAACTCCGGCCACCAGAGCCCCACCAAGAAGAAGTCCTGGGTGGGGAGGTTGGTCAAGTATGGCACCTTCAATGGACAATCCAGAAGTGTGCCCCGCGAGGACCGTGAGGCTTTCATTGTTCCTGATTATAGGCCCATTGATGGCCTCACTTCGCCACGCTACATGGGCATGTTTTCTCCTCGCCGCCTCTTCTCGCCGCGTAACTACTTCAGCACTTGA 1059 0.492 MMYEVEQQRFEQPLAKIETRKKTERSKGTGIEEERLEIVDLSSMSLDSLPNPSLNLATICKLDLSNNNLQNIPESLTARLLNMVVLDVHSNQLRSLPNSIGCLSKLKILNVSGNLIEYLPKSIENCRSLEELNANFNKLSQLPESIGFELINLKKLSVNCNKLVFLPRSTSHLTALKVLDARLNCLRSLPEDLENLINLEALNVSQNFQYLVALPYSIGLLLSLVELDVSYNKITSLPDSIGCLKKLQKLSLEGNPLASPPPDVVEQGLHAVKEYLVQKMNSGHQSPTKKKSWVGRLVKYGTFNGQSRSVPREDREAFIVPDYRPIDGLTSPRYMGMFSPRRLFSPRNYFST 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02448 352 Gene3D Ribonuclease Inhibitor 2 146 IPR032675 -
Cca11g02448 352 Gene3D Ribonuclease Inhibitor 148 278 IPR032675 -
Cca11g02448 352 SMART LRR_bac_2 221 240 - -
Cca11g02448 352 SMART LRR_bac_2 56 75 - -
Cca11g02448 352 SMART LRR_bac_2 173 192 - -
Cca11g02448 352 SMART LRR_bac_2 126 145 - -
Cca11g02448 352 SMART LRR_bac_2 80 99 - -
Cca11g02448 352 SMART LRR_bac_2 150 169 - -
Cca11g02448 352 SMART LRR_bac_2 103 122 - -
Cca11g02448 352 PANTHER LEUCINE-RICH REPEAT-CONTAINING 14 345 - -
Cca11g02448 352 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 14 345 - -
Cca11g02448 352 SMART LRR_typ_2 150 172 IPR003591 -
Cca11g02448 352 SMART LRR_typ_2 244 267 IPR003591 -
Cca11g02448 352 SMART LRR_typ_2 127 149 IPR003591 -
Cca11g02448 352 SMART LRR_typ_2 56 79 IPR003591 -
Cca11g02448 352 SMART LRR_typ_2 173 196 IPR003591 -
Cca11g02448 352 SMART LRR_typ_2 103 126 IPR003591 -
Cca11g02448 352 SMART LRR_typ_2 221 243 IPR003591 -
Cca11g02448 352 SMART LRR_typ_2 80 102 IPR003591 -
Cca11g02448 352 Pfam Leucine rich repeat 221 257 IPR001611 GO:0005515
Cca11g02448 352 Pfam Leucine rich repeat 152 207 IPR001611 GO:0005515
Cca11g02448 352 Pfam Leucine rich repeat 61 116 IPR001611 GO:0005515
Cca11g02448 352 ProSiteProfiles Leucine-rich repeat profile. 58 79 IPR001611 GO:0005515
Cca11g02448 352 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Cca11g02448 352 SUPERFAMILY L domain-like 36 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02448 Cca-Chr11 51541626 51546953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g02448 54 267 Receptor kinase-like Gene Family AT5G51350 30.942 1.34e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02448 - - gmx:100783239 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02448 11 51541626 51546953 Cca11g02448 11 51541626 51546953 ECH
Cca11g02448 11 51541626 51546953 Cca08g01479 08 43738454 43742630 PCT