Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01479 ATGGATATGTTCCAATTACAACCGGTTCATCTTCAGCCCATGGTGGTGAAGATGGACATGAGGAAGAGGGAGAAAACCAAATCCATGGAGAAAGAGAGGCTTCAAGTAATGGATTTAAGTGGCATGTCCTTGGACTCTCTTCCCAAACCTTCCCTCGACTTAGCTACCATTTGCAAGTTGGACCTATCTAATAACAATCTCCAGGACATTCCAGAATCCTTAACAGCGAGACTACTAAACTTGGAGGTGTTGGACGTGCGTTCCAACCAGCTCAAGTCTCTTCCCAATTCCATTGGCTGCCTCTCTAAGCTCAAGGTTTTGAATGTCTCAGGCAACTTCATCCAAATACTCCCCAAAACCATCGAGAATTGCAGAGCCTTAGAGGAACTGAATGCAAACTTCAACAAGCTTACCATGCTGCCAGACACAATAGGGTTTGAACTCATAAACCTAAAGAAGCTCTCAGTGAACTCCAACAAGCTAATGTTTCTTCCAAGCTCCACCTCACACCTAACATCTCTGAAAGTTCTCGATGCACGCTTGAATTGCCTAAGGGCACTCCCAGAGGATCTCGAGAATCTCATCAACCTTGAGACCCTTAACGTGAGCCAGAACTTCCAGTACTTGGAGACCCTCCCTTACTCCATAGGGCTCCTCTTGTCCCTTGTTGAACTTGATGTGAGCTACAACAAGATCAAGACCTTGCCTGAGTCCATAAGCTGCCTCAAGAAGCTTCAGAAACTGAGTGTTGAAGGGAACCCTCTTACGTGTCCCCCAATGGAGGTGGTGGAGCAGGGGCTGCATGTGGTGATGGAGTACATGCATCATAAGATCAACACGAGCCATGAAACCCCGAAAAAGAAAAGGTGGTGGATTGGGAAGATGGTGAAGTGTGGCACCTTCAATAAGGAAATGGGAAGTGGGAATAAACGACCTGAACATGTGGGTTACAACATGCTTAAGCAACAGAATATCAATGGTCTTGCTTCGCCAGGATTCATGGGGATGCTCTCGCCTCTTCGCATCTTCTCACCACGTCGTTCATTCGGTTGA 1053 0.4672 MDMFQLQPVHLQPMVVKMDMRKREKTKSMEKERLQVMDLSGMSLDSLPKPSLDLATICKLDLSNNNLQDIPESLTARLLNLEVLDVRSNQLKSLPNSIGCLSKLKVLNVSGNFIQILPKTIENCRALEELNANFNKLTMLPDTIGFELINLKKLSVNSNKLMFLPSSTSHLTSLKVLDARLNCLRALPEDLENLINLETLNVSQNFQYLETLPYSIGLLLSLVELDVSYNKIKTLPESISCLKKLQKLSVEGNPLTCPPMEVVEQGLHVVMEYMHHKINTSHETPKKKRWWIGKMVKCGTFNKEMGSGNKRPEHVGYNMLKQQNINGLASPGFMGMLSPLRIFSPRRSFG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01479 350 ProSiteProfiles Leucine-rich repeat profile. 80 101 IPR001611 GO:0005515
Cca08g01479 350 ProSiteProfiles Leucine-rich repeat profile. 56 77 IPR001611 GO:0005515
Cca08g01479 350 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 344 - -
Cca08g01479 350 SUPERFAMILY L domain-like 33 260 - -
Cca08g01479 350 SMART LRR_typ_2 219 242 IPR003591 -
Cca08g01479 350 SMART LRR_typ_2 171 194 IPR003591 -
Cca08g01479 350 SMART LRR_typ_2 54 77 IPR003591 -
Cca08g01479 350 SMART LRR_typ_2 148 170 IPR003591 -
Cca08g01479 350 SMART LRR_typ_2 78 100 IPR003591 -
Cca08g01479 350 SMART LRR_typ_2 125 147 IPR003591 -
Cca08g01479 350 SMART LRR_typ_2 101 124 IPR003591 -
Cca08g01479 350 Gene3D Ribonuclease Inhibitor 9 141 IPR032675 -
Cca08g01479 350 Gene3D Ribonuclease Inhibitor 142 276 IPR032675 -
Cca08g01479 350 SMART LRR_sd22_2 171 199 - -
Cca08g01479 350 SMART LRR_sd22_2 242 265 - -
Cca08g01479 350 SMART LRR_sd22_2 219 241 - -
Cca08g01479 350 SMART LRR_sd22_2 101 126 - -
Cca08g01479 350 SMART LRR_sd22_2 78 99 - -
Cca08g01479 350 SMART LRR_bac_2 194 215 - -
Cca08g01479 350 SMART LRR_bac_2 219 238 - -
Cca08g01479 350 SMART LRR_bac_2 171 190 - -
Cca08g01479 350 SMART LRR_bac_2 78 97 - -
Cca08g01479 350 SMART LRR_bac_2 148 167 - -
Cca08g01479 350 SMART LRR_bac_2 124 143 - -
Cca08g01479 350 SMART LRR_bac_2 54 73 - -
Cca08g01479 350 SMART LRR_bac_2 101 120 - -
Cca08g01479 350 Pfam Leucine rich repeat 59 112 IPR001611 GO:0005515
Cca08g01479 350 Pfam Leucine rich repeat 219 255 IPR001611 GO:0005515
Cca08g01479 350 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515
Cca08g01479 350 PANTHER LEUCINE-RICH REPEAT-CONTAINING 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01479 Cca-Chr8 43738454 43742630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01479 52 349 Receptor kinase-like Gene Family AT5G51350 29.487 4.47e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01479 - - gmx:100776295 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01479 08 43738454 43742630 Cca08g01479 08 43738454 43742630 ECH
Cca11g02448 11 51541626 51546953 Cca08g01479 08 43738454 43742630 PCT