Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02441 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCACGTGGCTGCCACTTTGCTCAGCCTAAGAGGCAGTTCCTTGAGAAGGGCTTGTCTTAAGTCTCAGCCTCACCAAACTTCTCATCCTCTTCAATGCAGGGCTCTTGAGTTGTGCTTCAATGTGGCTCTCAACAGGCTCCCAACAACACCTGCTCCTTTGATCCACACTCAGCCTTCTCTCTCCAATGCTCTCATTGCTGCACTCAAGAGAGCTCAGGCTCACCAGAGGAGGGGCTGCATAGAGCAACAGCAACAACAGCCTCTTCTCACTATCAAGGTTGAGCTGGAACAGCTCATCATATCCATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACCGCTGTTAAGAGCAACATAGAGGAGTACTCCTCACCCCATTCAGTTTTCCAGTGCTACAATAGCACTGGTGGTGTGTTTTCTTCTCCTTGTTCACCTTCTGCTAGTGAGAGCCATAGGGAAACGTCCAACAACCCTAGCAATTTCAGGCAGACTCATCACTTTTTAACTTCTTATGCTTCTGAGTTCAACCCTTCACTTCTCTTTTCTCCACCAAAGAATCATATCTCTGGGGCAGCTTCTTCTAGTAAGGATGTCAGGCTTGTTCTGGACATCCTCTTGAGGAAGAAGAAAAAGAACACTGTGATTGTTGGTGACTCAGTGTCATTAACTGAAGGGCTTGTGGGAGAGCTAATGGGAAGGCTAGAAAGGTCAGAAGTGCCGGATGAGTTAAAATCAACCCATTTTATCAAATTCCAATTCTCACCTGTTTCTTTGAGTTGCATGAAGAGAGATGAAGTTGAAATGAAACTGTTAGAACTGAAAAGGAAGGTGGATTCCATTGCATCAGGAGGAGGGGGTGGCATTTTTTATATTGGAGACCTGAAGTGGACAGTGGAGGATGGAAGCTGCAGTGAAAAAGAGGAAGGGTCACCAGATGGGGAAATTTCTGGTTATAACCCAGTTGATCATCTAATTTCAGAAATAGGAAAGTTATTCTGTGACTGTGGAACCTCAAATAACGCTAAGGTGTGGCTCATGGCAACTGCTAGTTATCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAAAAGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTTCATGCTCCCAGTGTCCTTGATTCAAAGATGAGCATCTCGCAGAACCCGTCTCATGTCCCTGAAACAAAGCCCTTTAGTAACAAGGAGCAGGAGGATAAGCTCAATTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCTCAATTTCTCAGACCAAACCAGAAGAAAACGTTGCCTTTCTGGCTTCAGTCCCATAGTACAGAAGAAGACCATAAGAAGGATGAATTTATCCAGTTGAAAAGAAAATGGAATAGACTGTGCCACTGTCTCCACCAAAGCAAACAGCCTCAAACCCAATGGAACTGGAACAACAGTTGTAATTCATCAAGCTCTATATCATTTGCCAACAATGCCACACATGGTTCCACCTCCAAACTCGTCCCTCGATTCCGGCGCCAACAATCATGCATCACTGAGTTCAATTTCGGCTACAAAAGGGAAGCAACAGAGCCTGTCTTGGATTCCCTTGAGGGTATGGAAGGTAAAGAAGTCAAGACTACCCTTGCTCTTGGAAATGGTGGTTCAGGTGAGACGGTGGGGGATCATATAACTGATACAACACTGCAACAAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTTAATAGCAGAAGCCTTGATTGATTCCAAATCAGCAAAGCAAAGTAAAAACATTACTTGGTTACTTCTGCAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAGTTGCAGAATCTGTTTTTGGCTCAACCGATGTGCTCCTTCACTTTGACATGCTAAAGAGAGAGGCTTCAATAGCCCTGTTTTCTGAAATGCTAGCAGGAGCATTGAAAACCCACCAACAGCTTGTGGTGTCAATAGAAAATGTTGACTTTGCTGATGCCCAATTCAATAAGTTCCTTTCTGATGGATTTGAAACAGGGAAGTTTGAAAATTCCACAGAAGAGAACTCAAGTCAAGTAATTTTCATATTGAGTAGTGGTGGACCCACGATCATTGAGGAGCAGAATGAGGACATGGTTATGAGGTTGTTGTGGCAGGTCAGTGAAACCAAGCCTAACTTAGAGACACCATCTGTCGCAACTGGGATGGCGGCGCCTTGTTTAGGCCACAAGAGAAGAGCTGAACTGGATTTGTTTTCTAACATCAAGAGTTTTCAAGGGAACAAAAAGAAAGAGTTTTCAAGACAAACAAGCTTTAACACTCTTGATCTGAACATGAGAGCTGATGAAGAGGGTGATGATGGGGAGGCTAAAGCAGGAGAAAGTAGTCCCATATCAAGTGATTTGACTAGGGAAACTATAGGTGATCCGCTGAACCAAAATGGATTTCTTGACTCAATAGAGAACCGATTTGAGTTTAACACAAGTCCAATTAAGGACAAGGAGATGGAAGTGTTGTTTTTGAGTAAGATCAAAGGGTCTTTTGAGGAGGTTTATGGGAAGCAATGTTTGGAGAATTTAAGTGTAGATGAGAGAGTGATTGAGCATGTGCGTGTTGGGTGTGGTTTTTTCACAAACAGGTTGTTTATGAAATGGCTGAAAGACGTTTTTGAATGTAGTTTACAAACAGTTAACTTTGGAGGGAAGGAGGGTATACTTTTTAGACTTTCTTGGTGTGGTAAAGGAGATAAAAAATCAAATAGTGGGTTCATGAGTTCTTCTCTGCCCAAGAGTATCAATGTTAACTACTTCATAGAGTGA 3006 0.4408 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKSNIEEYSSPHSVFQCYNSTGGVFSSPCSPSASESHRETSNNPSNFRQTHHFLTSYASEFNPSLLFSPPKNHISGAASSSKDVRLVLDILLRKKKKNTVIVGDSVSLTEGLVGELMGRLERSEVPDELKSTHFIKFQFSPVSLSCMKRDEVEMKLLELKRKVDSIASGGGGGIFYIGDLKWTVEDGSCSEKEEGSPDGEISGYNPVDHLISEIGKLFCDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPVPSGGLGLSLHAPSVLDSKMSISQNPSHVPETKPFSNKEQEDKLNCCEECASNYEKEAQFLRPNQKKTLPFWLQSHSTEEDHKKDEFIQLKRKWNRLCHCLHQSKQPQTQWNWNNSCNSSSSISFANNATHGSTSKLVPRFRRQQSCITEFNFGYKREATEPVLDSLEGMEGKEVKTTLALGNGGSGETVGDHITDTTLQQAHICKLLQENVPWQSETVPLIAEALIDSKSAKQSKNITWLLLQGNDTIGKRRLALAVAESVFGSTDVLLHFDMLKREASIALFSEMLAGALKTHQQLVVSIENVDFADAQFNKFLSDGFETGKFENSTEENSSQVIFILSSGGPTIIEEQNEDMVMRLLWQVSETKPNLETPSVATGMAAPCLGHKRRAELDLFSNIKSFQGNKKKEFSRQTSFNTLDLNMRADEEGDDGEAKAGESSPISSDLTRETIGDPLNQNGFLDSIENRFEFNTSPIKDKEMEVLFLSKIKGSFEEVYGKQCLENLSVDERVIEHVRVGCGFFTNRLFMKWLKDVFECSLQTVNFGGKEGILFRLSWCGKGDKKSNSGFMSSSLPKSINVNYFIE 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02441 1001 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Cca11g02441 1001 Pfam Clp amino terminal domain, pathogenicity island component 131 167 IPR004176 -
Cca11g02441 1001 PANTHER PROTEIN SMAX1-LIKE 5 1 965 - -
Cca11g02441 1001 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Cca11g02441 1001 Gene3D - 9 169 IPR036628 -
Cca11g02441 1001 Gene3D - 606 795 IPR027417 -
Cca11g02441 1001 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 965 - -
Cca11g02441 1001 MobiDBLite consensus disorder prediction 839 866 - -
Cca11g02441 1001 Coils Coil 456 476 - -
Cca11g02441 1001 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02441 Cca-Chr11 51418352 51422520 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02441 - - gmx:100814376 1636.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02441 11 51418352 51422520 Cca11g02441 11 51418352 51422520 ECH
Cca11g02441 11 51418352 51422520 Cca08g01492 08 44068028 44072613 PCT