Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01492 ATGCGCTCAGGAGCTTGTACATTGCAACAGACCCTCACAGCGGAGGCTGCTTCAGTGTTGAAGCACTCTCTCGGGTTGGCACGCAGAAGGGGCCATGCACAGGTCACCCCTCTGCATGTGGCTGCAACTTTGCTGAGCCTAAGAGCCAGTTCTCTCAGAAGGGCTTGCCTCAAGTCTCAGCCACACCAAACCTCACACCCTCTTCAGTGCAGGGCCCTTGAGCTTTGCTTCAATGTGGCCCTCAACAGGCTCCCAACCACTCCAGGCCCATTGCTCCACTCTCAGCCTTCCCTCTCCAATGCCCTCATTGCTGCTCtcaagcgggcccaggcccaccagagaagaggctgcattgagcagcagcagcagcagcctcttctcaccatcaaggttgagcttgaacagcttattatatccatccttgatgaccctagtgttagtagggttatgagggaagctggtttttccagcactgctgttaagaccaacatagagGACACTTCTTCAGCTCCTTCTGTTTTCCAGTGTTACAACGCTTCTGGTGGCGTTTTCTCCTCTCCTTGCTCTCCTTCTCCAAGTGAGAATCAGAGAGATAGCATCAACACTGTCAATGCTTTCAGACAGAACCAGAACCAGAACCACTTCCTGGCTGCTTACACTTCTGAGTTGAAGAAGGCCTCAGCCTCAGTGTTTCCCATCACTGAGTCACTACCACCAAACTCTTCCAAGGAGGATATCAAGGTGGTTCTTGATGTCCTCTTGAGGAAGAAGAAGAGGAACACTGTCATAGTTGGTGACTCAGTGCCACTCACTGAAGGCCTTGTGGGGGAGCTCATGGGGAAGCTGGAGAGAGGAGATGTGCCTGATGAGTTGAAGTCAACACATTTCATCAGGTTTCAGCTTGCACCGGTTTCTTTAAGGTTCATGAAGAGGGATGAAGTGGAAATGAGCCTCTCAGCACTGAAAAGGAAGGTGGATTCTGTTGTTACATCAGGAGGAGGAGGTGCTATTTTCTATGTTGGAGACCTGAAGTGGACAGTGGAAGCAAGTGAAAAGGAGGATGGGGATGTTTGTGGTTATAACCCAGTTGATCATCTAGTTGCTGAGATAGGGAAGCTATTTTGTGACTCCAACACTAAGGTGTGGCTTCTGGCCACAGCAAGTTATCAAACATACATGAGGTGCCAAATGAGGCAACCCCCTCTTGAGACTCAGTGGTGTCTTCAAGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTTCATGCTTCCAGTCTTCATGATTCAAAGATGACAATCTCCCAGAACCCGTCTCTTATGCTGGAAACAAGACTCTTCAAGGAGGAGCAGGATAAACTCAACTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCTCAGTTGTTCAAACCAGGCCAGAACAAACTGTTGCCTTCCTGGCTTCAGTCTCATACCACAGAAGCCCATCATAAGGATGAGTTAAGCCAGTTGAAAAGGAAATGGAACAGGCTATGTCAGTGTCTCCACCAGAGCAAGCAGCCTCAGAATCATTGGAGCAACAGTTTACATGGCAACCACAGTTCAAACGGAAAGATCTACCCTTACAACTCATCATACCCTTGGTGGCCAAACCAAGGAAGTGTGTTCACAGATTCAAGCTCAATATCTTTTGCTGATTCAGCTGCCAAACCCGCATATAGCTCCAACATTGTCCCTCGGTTCCGGCGCCAGCAATCATGCACCATTGAGTTCAATTTCAGTGATGTGAGTCAGAAAAAGCCATCACCACCAGCCTTGGACTCTCTCAAGGGCATGGAAGGTAATAACGAAGTAAAGATTACTCTTGCTCTTGGCAATTCAACATTCGGTGGTTCGGGGCAAACGGTGGAAAATATCATAACTACTACTACTGATAGAACACTGCGACGAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAGACGGTTTCTTCCATAGCTGAGGCCTTGGTTGATTCCAAATCTGCAAAGCAAAGTGCTACTACTTGGTTGTTGTTGCAAGGAACTGACTCTATTGGGAAAACAAGGTTGGCACGTACTATTGCTGAATCAGTGTTTGGCTCAGTGGATATGCTCCTTCACTTGGACATGCTGAAAAGCAAGGAGAATAATTCAGCAACCCCGTTTGCTGAAATGGTGGCTGGAGCATTGAAGAGCCATGAGAAGCTTGTGATTCTGGTAGAAAGTTTGGATTTTGCGGATGCCCATTTCAGGAAGTTCCTTGTTGATGGGTTTGAGACTTCAAAGTTTGGAAATTTAAGTAGGAATGAAGAGAGTTCAGGCCAAGCAATATTTATTTTGACCAATGGTGATAGTAGAGGCAGTGAAGAGGAGAACAAGAAGGAGTCTGTGATGAAGTTGGTGTTGCAGGTAAATGAAACCAAGCCTACCTTGGAGTCTTCATCACCTTGTTTGGGTCAAAAGAGAAGGGATGAAGTACTGGATTTGTTTACCAAGGTTAAGAAACCAAGGATTGAGGAGAAGGAGGAGGGTGTATTGGTTTATGAACAAGGGAACAGAAAGAAAGTGTTTTCAAGGCATTCAAGCTTTAACAATCTTGACCTGAACATGAAAGCTGGTGAAGAAGAGGATGATGGGGAAGAGAAAACAGGTGGAAGCAGTCCAATTTCAAGTGATTTGACAAGGGAAACTGTGGCAGATCCATTGAGCTGGAATGGGTGTCTTGAGTCAATTGAGAACAGGTTTGAGTTGAATGAGAGGGAGAGGGAAGTGGGGGAGATGTTTTTGTCAAAGATAAAAGAGTCTTTTGAGGAGGTATATGGGGTGGTGAAGTTTACTGTAGAGGAGAGGGTGATAGAGGAAATTGGTGTGGGGTGTGGTACATTTACTAACAGCATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGCAGTTTACAGACAGTTAACTTTGGTGGGAGGGAGGGTATAGGTTTTACACTTTGTTGGGGTGGTAAAGGTGATAGGAAATGGGATAGTGGCTTCATGGGTTCATGTTTGCCCAACAATGTTCAAGTTAACTACTTCATGGATTGA 3096 0.4338 MRSGACTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPGPLLHSQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKTNIEDTSSAPSVFQCYNASGGVFSSPCSPSPSENQRDSINTVNAFRQNQNQNHFLAAYTSELKKASASVFPITESLPPNSSKEDIKVVLDVLLRKKKRNTVIVGDSVPLTEGLVGELMGKLERGDVPDELKSTHFIRFQLAPVSLRFMKRDEVEMSLSALKRKVDSVVTSGGGGAIFYVGDLKWTVEASEKEDGDVCGYNPVDHLVAEIGKLFCDSNTKVWLLATASYQTYMRCQMRQPPLETQWCLQAVPVPSGGLGLSLHASSLHDSKMTISQNPSLMLETRLFKEEQDKLNCCEECASNYEKEAQLFKPGQNKLLPSWLQSHTTEAHHKDELSQLKRKWNRLCQCLHQSKQPQNHWSNSLHGNHSSNGKIYPYNSSYPWWPNQGSVFTDSSSISFADSAAKPAYSSNIVPRFRRQQSCTIEFNFSDVSQKKPSPPALDSLKGMEGNNEVKITLALGNSTFGGSGQTVENIITTTTDRTLRRAHICKLLQENVPWQSETVSSIAEALVDSKSAKQSATTWLLLQGTDSIGKTRLARTIAESVFGSVDMLLHLDMLKSKENNSATPFAEMVAGALKSHEKLVILVESLDFADAHFRKFLVDGFETSKFGNLSRNEESSGQAIFILTNGDSRGSEEENKKESVMKLVLQVNETKPTLESSSPCLGQKRRDEVLDLFTKVKKPRIEEKEEGVLVYEQGNRKKVFSRHSSFNNLDLNMKAGEEEDDGEEKTGGSSPISSDLTRETVADPLSWNGCLESIENRFELNEREREVGEMFLSKIKESFEEVYGVVKFTVEERVIEEIGVGCGTFTNSMFEKWLKDIFQSSLQTVNFGGREGIGFTLCWGGKGDRKWDSGFMGSCLPNNVQVNYFMD 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01492 1031 MobiDBLite consensus disorder prediction 874 902 - -
Cca08g01492 1031 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Cca08g01492 1031 Gene3D - 9 169 IPR036628 -
Cca08g01492 1031 Gene3D - 627 840 IPR027417 -
Cca08g01492 1031 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Cca08g01492 1031 PANTHER PROTEIN SMAX1-LIKE 5 1 1004 - -
Cca08g01492 1031 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1004 - -
Cca08g01492 1031 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Cca08g01492 1031 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01492 Cca-Chr8 44068028 44072613 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01492 - - gmx:102660146 1609.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01492 08 44068028 44072613 Cca08g01492 08 44068028 44072613 ECH
Cca11g02441 11 51418352 51422520 Cca08g01492 08 44068028 44072613 PCT