Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02436 ATGGATGCTGTAATAAGGGTTTTTAAACGTGTCTCAGGGTTATCTGAAATTGATGGTGACAATAAAGCATCAGGGGTTGCATTTTGTTCCATCCGTTTATTGGTGGCCTCAACTCAGGCCATCAATTTGATTGGAAAGCAGGGCTCATTAATTAAATCTATACAGGAAAATACCGGATCTTCTGTTAGAGTACTGTCTGGAGATGAGGTTCCCTTTTATGCTGCTGCTGACGAGAGGATTGTGGAACTGCAGGGAGAAGCCTTGAAGGTCCTTAGGGCCCTGGAAGCAGTAGTTGGGCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCTTTGTTTGAGAAAACTTACAATGCAACAATCTCCCAAGAGCGCCAGGCAGATACCTGGGTTGACAAACAGTCGCTGCATAGTGCTTCACAACCTAGCATTGTAACTGATATGTCACTTTCAACAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAGTCAATTGGATTCATTCCTCCCTCCCTCCACAATGTCAATATATGGGCAAGATACTTCACTTTCTGGTCTTCGTTCTTCGACACTAAGTCGACCCAATGTTCCTCCTATTGTTACCACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATCATTGGTATACAAGGGGCTAATATTGATTACATTCGCCGAACTAGTGGGGCCATATTGACTGTGCAGGAGAGCCGTGTGCCAGATGAAATCATTGTGGAAATTAAAGGAACCTCATCTCAGGTTCAAATGGCACAACAGTTGATTCAGGAAGTTGTAAGCAATCACAAGGAACCTGTCGCTAGTAATTACAGCAGCAGCGGGTATGGATCTTCTGGTCTGGGAGGCTATAGTACTTTCAGACTTTGA 900 0.4378 MDAVIRVFKRVSGLSEIDGDNKASGVAFCSIRLLVASTQAINLIGKQGSLIKSIQENTGSSVRVLSGDEVPFYAAADERIVELQGEALKVLRALEAVVGHLRKFLVDHSVLPLFEKTYNATISQERQADTWVDKQSLHSASQPSIVTDMSLSTKRDSLFADRESQLDSFLPPSTMSIYGQDTSLSGLRSSTLSRPNVPPIVTTVIQTMQIPLSYAEDIIGIQGANIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQMAQQLIQEVVSNHKEPVASNYSSSGYGSSGLGGYSTFRL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02436 299 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN PEPPER 1 287 - -
Cca11g02436 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 24 109 IPR036612 GO:0003723
Cca11g02436 299 Pfam KH domain 206 268 IPR004088 GO:0003723
Cca11g02436 299 Pfam KH domain 31 97 IPR004088 GO:0003723
Cca11g02436 299 ProSiteProfiles Type-1 KH domain profile. 203 266 - -
Cca11g02436 299 CDD KH-I 205 267 - -
Cca11g02436 299 SMART kh_6 27 102 IPR004087 GO:0003676
Cca11g02436 299 SMART kh_6 202 271 IPR004087 GO:0003676
Cca11g02436 299 CDD PCBP_like_KH 30 98 - -
Cca11g02436 299 Gene3D K Homology domain, type 1 201 276 IPR036612 GO:0003723
Cca11g02436 299 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 287 - -
Cca11g02436 299 Gene3D K Homology domain, type 1 29 104 IPR036612 GO:0003723
Cca11g02436 299 ProSiteProfiles Type-1 KH domain profile. 28 97 - -
Cca11g02436 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 198 272 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02436 Cca-Chr11 51324906 51328901 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02436 K21444 - gmx:100802089 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02436 11 51324906 51328901 Cca11g02436 11 51324906 51328901 ECH
Cca11g02436 11 51324906 51328901 Cca08g01498 08 44285303 44292611 PCT